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# 1  
Old 09-24-2014
Search text file

Code:
 awk -F "[<>]" ' $2 ~ /<Clinical features:>|<Clinical features:>|<Inheritance pattern:>|<Inheritance pattern:>/{print $2, $3}' OFS='\t' genedx156.txt > output.txt

The above command seems to run but no results are in the output.

Basically, I am just searching for those key words and output the data to a new output file. Thank you Smilie.

output.txt
Code:
Clinical features:
The recessive form of hypohidrotic ectodermal dysplasia that is due to mutation in the EDAR gene (coding for the human homolog of the mouse downless gene) is clinically indistinguishable from the X-linked form. It affects males and females equally. Clinical features include hypotrichosis with fine, sparse and light-colored scalp and body hair, decreased ability to sweat leading to heat intolerance, hypodontia and conical or peg shaped teeth. Hypoplastic breasts are not uncommon. Typical facial features are periorbital hyperpigmentation, saddle nose and full lips. Affected individuals in families in which the disease behaves in a dominant manner are similarly affected. The X-linked form of hypohidrotic ectodermal dysplasia due to a mutation in the EDA1 gene is much more common than mutation(s) in the EDAR/downless gene.
Inheritance pattern:
Mutations in the EDAR gene are responsible for both autosomal dominant and autosomal recessive forms of hypohidrotic ectodermal dysplasia.


Last edited by jim mcnamara; 09-24-2014 at 04:48 PM..
# 2  
Old 09-24-2014
$2 in your case is a single word, Not "Clinical features:", which is $1 and $2 [ or two words]. Change the -F section to:
Code:
-F '[\<\>]'

# 3  
Old 09-24-2014
I don't see the necessity to search twice for each keyword; if there's a reason, please tell me. You might want to adapt your script slightly:
Code:
awk -F "[<>]" '/^Clinical features:$|^Inheritance pattern:$/{print;getline;print}' OFS='\t' genedx156.txt

# 4  
Old 09-24-2014
Code:
 awk -F "[<>]" '/^Clinical features:$|^Inheritance pattern:$/{print;getline;print}' OFS='\t' genedx156.txt > output.txt

Only the first line of each search seems to result, then it gets truncated. Thank you Smilie.

the desired output.txt
Clinical features:
The recessive form of hypohidrotic ectodermal dysplasia that is due to mutation in the EDAR gene (coding for the human homolog of the mouse downless gene) is clinically indistinguishable from the X-linked form. It affects males and females equally. Clinical features include hypotrichosis with fine, sparse and light-colored scalp and body hair, decreased ability to sweat leading to heat intolerance, hypodontia and conical or peg shaped teeth. Hypoplastic breasts are not uncommon. Typical facial features are periorbital hyperpigmentation, saddle nose and full lips. Affected individuals in families in which the disease behaves in a dominant manner are similarly affected. The X-linked form of hypohidrotic ectodermal dysplasia due to a mutation in the EDA1 gene is much more common than mutation(s) in the EDAR/downless gene.
Inheritance pattern:
Mutations in the EDAR gene are responsible for both autosomal dominant and autosomal recessive forms of hypohidrotic ectodermal dysplasia.
# 5  
Old 09-25-2014
Code:
awk '/^[^:]*:$|^[ \t]*$/{f=0} /^Clinical features:$|^Inheritance pattern:$/{f=1}f' genedx156.txt > output.txt

This User Gave Thanks to SriniShoo For This Post:
# 6  
Old 09-25-2014
Thank you Smilie.
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