9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello all ; )
I'got a file1 with a lot of emails like :
fistname.lastname@domaine1.comAnd another file2 with emails like
fistname.lastname@domaine2.ct.netI need a shell script that will read each line from the file1 and try to find if in file2 the fistname.lastname exist.
If yes, the... (1 Reply)
Discussion started by: Aswex
1 Replies
2. Shell Programming and Scripting
Hi,
Below is my input file :
AAAG(12) TC(14)
AACCCT(66) AACCCT(30) AACCCT(18) AACCCT(48)
TCTG(12) TCTG(20) TCTG(16) AC(12) AC(12) TCTG(16) TCTG(12) AC(12) AC(12) AC(12)
AC(26) AC(14)
AGTG(12) AC(24)
AGTG(12) TCC(12)
Desired output :
AAAG TC
AACCCT AACCCT AACCCT AACCCT
TCTG TCTG... (4 Replies)
Discussion started by: perl_beginner
4 Replies
3. Shell Programming and Scripting
Hi,
I am having trouble while using 'sed' with reading files. Please help. I have 3 files. File A, file B and file C. I want to find content of file B in file A and replace it by content in file C.
Thanks a lot!!
Here is a sample of my question.
e.g. (file A: a.txt; file B: b.txt; file... (3 Replies)
Discussion started by: dirkaulo
3 Replies
4. Shell Programming and Scripting
Input file:
CCNI data564_input1 264
CORO1A data564_input2 155
ABC-B data17_input1 3466
ABC-B data17_input2 1133
ABC-B data17_input3 2162
ABC-B data17_input4 2019
HNRNPA2B1 data95_input1 101
HNRNPA2B1 data95_input2 340
IFITM1 data105_input2 291
IFITM2 data105_input1 505... (3 Replies)
Discussion started by: cpp_beginner
3 Replies
5. Shell Programming and Scripting
Format of one input file:
# >length=1
seq program data 909 1992
seq program record 909 1190
Desired output result:
# >length=1
length=1 program data 909 1992
length=1 program record 909 1190
I wanna to replace all the column 1 content (exclude the content start with "#") with the... (5 Replies)
Discussion started by: cpp_beginner
5 Replies
6. Programming
dear all,
i want to insert string in file to mysql i just want how to do that cause i am poor in sql languages ...
so this file like this
DATA.txt
doni|student|westjava|123412|lombok|
iwan|student|westjava|1234412|utankayu|
rio|student|westjava|12342|cempedak|
so i want insert DATA.txt to... (2 Replies)
Discussion started by: zvtral
2 Replies
7. Shell Programming and Scripting
Hi All,sorry for inconvience....please find the attachement for my question i am unable to paste the question here....please help me in slving thisthanksk.k (4 Replies)
Discussion started by: G.K.K
4 Replies
8. Shell Programming and Scripting
Hi Experts,
I have binary files contain an ID Line as:
:
:
$Header: FNDSCMON.fmb 115.6 2000/01/11 10:26:10 pkm ship$
:
:
where the ID Line format is:
$Header: <File_Name> <Version> <Last_update_date_time> pkm ship$
In this Example:
File_Name = FNDSCMON.fmb
Version = 115.6... (13 Replies)
Discussion started by: victorcheung
13 Replies
9. Shell Programming and Scripting
Hi,
variable1="This is a car"
Now I want to replace the content of variable1, "car" to "dog". Is there any simple command I can use.
Thanks.
Joseph (4 Replies)
Discussion started by: josephwong
4 Replies
BP_META_GFF(1p) User Contributed Perl Documentation BP_META_GFF(1p)
NAME
bp_meta_gff.pl - Get/set Bio::DB::GFF meta-data
SYNOPSIS
# set the following meta data values
% bp_meta_gff.pl -d testdb tag1=value1 tag2=value2
# get the indicated meta data value
% bp_meta_gff.pl -d testdb tag1 tag2
DESCRIPTION
This script gets or sets metadata in a Bio::DB::GFF database. Not all adaptors support this operation! To set a series of tags, pass a
set of tag=value pairs to the script. To get the contents of a series of tags, pass the bare tag names.
The output from the get operation will be an easily parseable set of tag=value pairs, one per line.
COMMAND-LINE OPTIONS
Command-line options can be abbreviated to single-letter options. e.g. -d instead of --database.
--database <dsn> Mysql database name (default dbi:mysql:test)
--adaptor <adaptor> Mysql adaptor (default dbi::mysqlopt)
--user <user> Username for mysql authentication
--pass <password> Password for mysql authentication
SEE ALSO
Bio::DB::GFF
AUTHOR
Lincoln Stein, lstein@cshl.org
Copyright (c) 2002 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-03-02 BP_META_GFF(1p)