10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
I have the below string which i need to compare with a file and replace this string in the file which matches closely. Can anyone help me on this.
string(Scenario 1)- user::r--,user::ourfrd:r--
String(Scenario 2)- user::r--
File
****
# file: /local/Desktop/myfile
# owner: me
# group:... (6 Replies)
Discussion started by: sarathy_a35
6 Replies
2. Shell Programming and Scripting
Sorry for the long/weird title but I'm stuck on a problem I have. I have this XML file:
</member>
<member>
<name>TransactionID</name>
<value><string>123456789123456</string></value>
</member>
<member>
<name>Number</name>
... (9 Replies)
Discussion started by: cozzin
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3. UNIX for Dummies Questions & Answers
Hi Everyone,
I have a requirement in ksh where i have a set of files in a directory. I need to search each and every file if a particular string is present in the file, delete that line and replace that line with another string expression in the same file.
I am very new to unix. Kindly help... (10 Replies)
Discussion started by: Pradhikshan
10 Replies
4. Shell Programming and Scripting
Hi,
Here's my dilemma.
I need to replace the string Sept_2012 to Oct_2012 in all *config.py files within the current directory and below directories
Is this possible?
Also I am trying to find all instances of the string Sept_2012 within files in the current directory and below
I have... (13 Replies)
Discussion started by: pure_jax
13 Replies
5. Shell Programming and Scripting
here is what i want to achieve... consider a file contains below contents. the file size is large about 60mb
cat dump.sql
INSERT INTO `table1` (`id`, `action`, `date`, `descrip`, `lastModified`) VALUES (1,'Change','2011-05-05 00:00:00','Account Updated','2012-02-10... (10 Replies)
Discussion started by: vivek d r
10 Replies
6. Shell Programming and Scripting
Can someone tell me how I can do this?
e.g:
a=$(echo -e wert trewt ertert ertert ertert erttert
erterte
rterter
tertertert
ert)
How do i replace the STRING with $a?
I try this:
sed -i 's/STRING/'"$a"'/g' filename.ext
but this don' t work (2 Replies)
Discussion started by: jforce
2 Replies
7. Shell Programming and Scripting
Hi,
i call my shell like:
my_shell "my project name"
my script:
#!/bin/bash -vx
projectname=$1
sed s/'PROJECT_NAME ='/'PROJECT_NAME = '$projectname/ <test_config_doxy >temp
cp temp test_config_doxy
the following error occurres:
sed s/'PROJECT_NAME ... (2 Replies)
Discussion started by: vivelafete
2 Replies
8. Shell Programming and Scripting
Hello,
I really would appreciate some help with a bash script for some string manipulation on an SQL dump:
I'd like to be able to rename "sites/WHATEVER/files" to "sites/SOMETHINGELSE/files" within the sql dump.
This is quite easy with sed:
sed -e... (1 Reply)
Discussion started by: otrotipo
1 Replies
9. Shell Programming and Scripting
Hello: I have another question. Please consider the following two sample, tab-delimited files:
File_1:
Abf1 YKL112w
Abf1 YAL054c
Abf1 YGL234w
Ace2 YKL150w
Ace2 YNL328c
Cup9 YDR441c
Cup9 YDR442w
Cup9 YEL040w
...
File 2:
...
ABF1 YKL112W
ACE2 YLR131C (9 Replies)
Discussion started by: gstuart
9 Replies
10. UNIX for Dummies Questions & Answers
Hi All,
My requisite is to search for the string "0108"(which is the year and has come in the wrong year format) in a particular column say 4th column in a tab delimited file and then replace it with 2008(the correct year format) in the same position where 0108 was found in the same file..The... (27 Replies)
Discussion started by: ganesh_248
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GO::Model::Association(3pm) User Contributed Perl Documentation GO::Model::Association(3pm)
NAME
GO::Model::Association - association between a GO term and a gene product
SYNOPSIS
# print all gene products associated with a GO::Model::Term
my $assoc_l = $term->association_list;
foreach my $assoc (@$assoc_l) {
printf "gene product:%s %s %s (evidence: %s)
",
$assoc->gene_product->symbol,
$assoc->is_not ? "IS NOT" : "IS",
$term->name,
map {$_->code} @{$assoc->evidence_list};
}
DESCRIPTION
Represents an association between a GO term (GO::Model::Term) and a gene product (GO::Model::GeneProduct)
go_public_acc
Usage -
Returns -
Args -
add_evidence
Usage - $assoc->add_evidence($my_evid);
Returns -
Args - GO::Model::Evidence
evidence_list
Usage - my $ev_l = $assoc->evidence_list;
Returns -
Args -
gets/sets arrayref of GO::Model::Evidence
evidence_as_str
Usage - print $assoc->evidence_as_str
Usage - print $assoc->evidence_as_str(1); #verbose
Returns -
Args - verbose
concatenates evcodes together, for display
has_evcode
Usage - if $assoc->has_evcode("IEA");
Returns - boolean
Args - evcode [string]
remove_evcode
Usage - $assoc->remove_evcode("IEA");
Returns -
Args - evcode [string]
removes all evidence of the specified type from the association; useful for filtering
evidence_score
Usage - my $score = $assoc->evidence_score
Returns - 0 <= float <= 1
Args -
returns a score for the association based on the evidence;
This is an EXPERIMENTAL method; it may be removed in future versions.
The evidence fields can be thought of in a loose hierachy:
TAS
IDA
IMP/IGI/IPI
ISS
NAS
see http://www.geneontology.org/GO.evidence.html
gene_product
Usage - my $gp = $assoc->gene_product
Returns -
Args -
gets sets GO::Model::GeneProduct
assigned_by
Usage -
Returns -
Args -
is_not
Usage -
Returns -
Args -
gets/sets boolean representing whether this relationship is negated
assocdate
Usage -
Returns -
Args -
assocdate
Usage -
Returns -
Args -
gets/sets integer representing the date of the association (YYYYMMDD format)
role_group
Usage -
Returns -
Args -
gets/sets integer to indicate which associations go together
perl v5.14.2 2013-02-07 GO::Model::Association(3pm)