I wasn't quite sure how to title this one! Here goes:
I have some already partially parsed log files, which I now need to extract info from. Because of the way they are originally and the fact they have been partially processed already, I can't make any assumptions on the number of fields and the exact format etc. All I know is I can look for certain patterns. An extract of the original source is:
I want to extract based on:
The first line example being:
Each line may contain all, some or none of the above. My ideal output based on the above would be something like:
(ideally, if there is no MEMLIMIT found on a line for example):
Started: cn026 MEMLIMIT: 0 G MEM: 13 M
I've messed around with gsub in awk to extract a single instance but couldn't work out how to select on multiple patterns...
Any help as always would be appreciated!
Last edited by Scrutinizer; 10-13-2013 at 06:38 AM..
Reason: additional code tags
Thanks for that Scrutinizer - so very close to what I need! If I've got it correct, it only displays if all three patterns are found, ideally it would be great if it could print every line with 1 or more matches:
or just blank rather than 0 G on the MEMLIMIT. Basically every entry _should_ have a 'Started on' and a MEM:, but not necessarily a MEMLIMIT
Last edited by chrissycc; 10-13-2013 at 07:46 AM..
Reason: correction
Hi,
I need help to match patterns from between two different files and extract region of strings.
inputfile1.fa
>l-WR24-1:1
GCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGG
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a_m1.log
b_1.log
c_1.log
d_1.log
b_2.log
c_2.log
d_2.log
e_m1.log
a_m2.log
e_m2.log
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