Looping through entire directory and count unique values
Hello,
I`m a complete newbie to coding, please help with this problem.
I have multiple files in a directory, I have to loop through the contents of each file and extract number of unique isoforms in that file. Each file is tab delimited and only the line with the first parent (column 3) needs to be read.
Sample file
In the above sample the only revelant line is with the word 'parent' in column 3.
Column 9 is a composite column, where subfields are separated by ';' but the last subfield doesnt end with ';' as in the above line.
The subfield Isoforms=HCG177897.2_FGT022,HCG177897.2_FGT023 needs to be extracted and the number of isoforms need to be counted.
In this case there are 2 isoforms, which can be also calculated by number of (commas+1). Here there are 2 isoforms, separated by a comma.
I should note that sometimes there may be irrelevant fields after Isoforms,
example
but the calculations remain the same.
So I want to count the number of isoforms in each file in the directory
and write output in the form
Hi,
Sure it's an easy one, but it drives me insane.
input ("|" separated):
1|A,B,C,A
2|A,D,D
3|A,B,B
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read n
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Hello Team,
I need your help on the following:
My input file a.txt is as below:
3330690|373846|108471
3330690|373846|108471
0640829|459725|100001
0640829|459725|100001
3330690|373847|108471
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Looking for a little help here.
I have 1000's of text files within a multiple folders.
YYYY/
/MM
/1000's Files
Eg.
2014/01/1000 files
2014/02/1237 files
2014/03/1400 files
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dot is-big 2
dot is-round 3
dot is-gray 4
cat is-big 3
hot in-summer 5
I want to count the frequency of each individual "unique" value in the 1st column. Thus, the desired output would be as follows:
dot 3
cat 1
hot 1
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317476,317756,0
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Hi
I have the following info in a file -
<Cell id="25D"/>
<Cell id="26A"/>
<Cell id="26B"/>
<Cell id="26C"/>
<Cell id="27A"/>
<Cell id="27B"/>
<Cell id="27C"/>
<Cell id="28A"/>
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