10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Create a single bash script that does the following:
a. Print out the number of occurrences for each motif that is found in the bacterial genome and output to a file called motif_count.txt
b. Create a fasta file for each motif (so 3 in total) which contains all of the genes and their... (6 Replies)
Discussion started by: dre
6 Replies
2. UNIX for Beginners Questions & Answers
Hi everyone
I need some help
I want to create an script which does some processing
it takes the two arguments 201901010000 and 201901020200 - so YYYMMDDHHMM
I want to split processing into hours from start until end,
I dont get why this works but when I add to a future variable... (1 Reply)
Discussion started by: kl1ngac1k
1 Replies
3. Shell Programming and Scripting
Dear all,
Please help with the following.
I have a file, let's call it data.txt, that has 3 columns and approx 700,000 lines, and looks like this:
rs1234 A C
rs1236 T G
rs2345 G T
Please use code tags as required by forum rules!
I have a second file, called reference.txt,... (1 Reply)
Discussion started by: aberg
1 Replies
4. Shell Programming and Scripting
I have the following while loop that I put in a script, demo.sh:
while read rna; do
aawork=$(echo "${rna}" | sed -n -e 's/\(...\)\1 /gp' | sed -f rna.sed)
echo "$aawork" | sed 's/ //g'
echo "$aawork" | tr ' ' '\012' | sort | sed '/^$/d' | uniq -c | sed 's/*\(*\) \(.*\)/\2: \... (3 Replies)
Discussion started by: faizlo
3 Replies
5. Shell Programming and Scripting
Hi, I have written a script that allows me to repetitively play a music file $N times, which is specified through user input. However, if I want to exit the script before it has finished looping $N times, if I use CTRL+c, I have to CTRL+c however many times are left in order to complete the loop.... (9 Replies)
Discussion started by: hilltop_yodeler
9 Replies
6. Shell Programming and Scripting
Having issues with an expect script. I've been scripting bash, python, etc... for a couple years now, but just started to try and use Expect. Trying to create a script that takes in some arguments, and then for now, just runs a pwd command(for testing, final will be command I pass).
Here is... (0 Replies)
Discussion started by: cbo0485
0 Replies
7. Shell Programming and Scripting
Hi,
I am working on bash script after a long time. I am getting error near done statement while running a for loop snippet. The error says "Syntax error near unexpcted token 'done'"
please suggest what could be wrong. here is the snippet
elements=${#option_arr} //an array of values... (1 Reply)
Discussion started by: arundhati_s
1 Replies
8. Shell Programming and Scripting
Hi all
Sorry for the basic question, but i am writing a shell script to get around a slightly flaky binary that ships with one of our servers. This particular utility randomly generates the correct information and could work first time or may work on the 12th or 100th attempt etc !.... (4 Replies)
Discussion started by: rethink
4 Replies
9. Shell Programming and Scripting
SEND_MESSAGE=test
echo $SEND_MESSAGE
if
then
echo `date` > update_dt_ccaps.lst
echo "The file transfer failed" >> update_dt_ccaps.lst
SEND_MESSAGE=false
fi
The above code is showing error in bash shell as :
./test: line 5: [: test: integer expression expected
... (2 Replies)
Discussion started by: DILEEP410
2 Replies
10. Shell Programming and Scripting
I have a very basic bash shell script, which has many "while... done; for .... done" loop clauses, like the following
~~
#!/bin/bash
while blablalba; do
....
done < /tmp/file
for line in `cat blablabla`; do grep $line /tmp/raw ; done > /tmp/1;
while blablalba2; do
....
done <... (2 Replies)
Discussion started by: fedora
2 Replies