10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
2. Shell Programming and Scripting
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. Shell Programming and Scripting
The below code works great, kindly provided by @Don Cragun, the lines in bold print the current output. Since some of the fields printed can be blank some of the fields are shifted. I can not seem too add . to the blank fields like in the desired output. Basically, if there is nothing in the field... (10 Replies)
Discussion started by: cmccabe
10 Replies
4. Shell Programming and Scripting
Hi
I have a file as below
<field1> <field2> <field3> ... <field_num1> <field_num2>
Trying to sort based on difference of <field_num1> and <field_num2> in desceding order and print all fields.
I tried this and it doesn't sort on the difference field .. Appreciate your help.
cat... (9 Replies)
Discussion started by: newstart
9 Replies
5. UNIX for Dummies Questions & Answers
Hello Everyone,
I've got a comma-delimited file that looks like this:
0012,123 ,456 ,05/12/2014
0123,525 ,286 ,05/12/2014
0456,791 ,300 ,05/12/2014
1095,759 ,300 ,05/12/2014
1344,576 ,292 ,05/12/2014
1558,551 ,283 ,05/12/2014
002183719, , ... (9 Replies)
Discussion started by: Scottie1954
9 Replies
6. Shell Programming and Scripting
I'm trying to compare 2 files for differences in a selct number of fields. When differnces are found it will write the whole record of the second file including appending '|C' out to a delta file. Each record will have 20 fields, but only want to do comparison of 1st 15 fields. The 1st field of... (7 Replies)
Discussion started by: sljnk
7 Replies
7. Shell Programming and Scripting
Hello;
I have a file consists of 4 columns separated by tab. The problem is the third fields. Some of the them are very long but can be split by the vertical bar "|". Also some of them do not contain the string "UniProt", but I could ignore it at this moment, and sort the file afterwards. Here is... (5 Replies)
Discussion started by: yifangt
5 Replies
8. Shell Programming and Scripting
Hi,
Is there any short method to print from a particular field till another filed using awk?
Example File:
File1
====
1|2|acv|vbc|......|100|342
2|3|afg|nhj|.......|100|346
Expected output:
File2
====
acv|vbc|.....|100
afg|nhj|.....|100 (8 Replies)
Discussion started by: machomaddy
8 Replies
9. Shell Programming and Scripting
How do I print all the fields of a record except for the $(NF) field? (4 Replies)
Discussion started by: locoroco
4 Replies
10. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
1 Replies