OK, thanks...
So, as I said, I have two input files.
The first ("yearly book") is structured like this:
Code:
1.01 text I would
like to extract
(including newlines etc.)
1
2
3
(....text I don't need...)
1.02 some more text I would like to extract
in more than one line, again and terminator
is "1" in line
1
2
...
I managed this using:
Code:
awk '/1\.01/,/1$/{if (!/1$/)print}' file1.txt
I have hundreds if those "indexes" (1.01, 1.02,...) and doing it manually would be nonsense.
I also have file with list of them in file with all indexes of all yeary books structured like this:
Code:
1990 1.01 some description I don't need
1990 1.02 more desc...
(...)
1991 1.0 some desc I don't need
I've managed to extract all indexes for given year:
What I would like to do is join the two commands (or write a combined one) so it would pass all "indexes" from the command below into the command aboce and I would get all texts from file1 I need...
If I understand what you're trying to do, the following seems to work:
Code:
!/bin/ksh
year=${1:-1990}
awk -v y="$year" '
FNR == NR && $1 == y {
# Save index...
idx[$2]
next
}
$1 in idx,$1 == 1 {
if($1 != 1) print
}' indexes "yearly book"
If you're using a Solaris/SunOS system, use /usr/xpg4/bin/awk, /usr/xpg6/bin/awk, or nawk instead of awk.
With the input files specified in the 1st message in this thread, the output produced is:
Code:
1.01 text I would
like to extract
(including newlines etc.)
1.02 some more text I would like to extract
in more than one line, again and terminator
is "1" in line
when the script is invoked with no operands and when it is invoked with the operand "1990".
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
I have a list of IDs in file1 and a list of sequences in file2. I can print sequences from file2, but I'm asking for help in printing the sequences in the same order as the IDs appear in file1.
file1:
EN_comp12952_c0_seq3:367-1668
ES_comp17168_c1_seq6:1-864
EN_comp13395_c3_seq14:231-1088... (5 Replies)
I have two files.
File 1 is a two-column index file, e.g.
comp11084_c0_seq6:130-468(-) comp12746_c0_seq3:140-478(+)
comp11084_c0_seq3:201-539(-) comp12746_c0_seq2:191-529(+)
File 2 is a sequence file with headers named with the same terms that populate file 1. ... (1 Reply)
file1:
file2:
I need to find matches for any lines in file1 that appear in file2. Desired output is '>' plus the file1 term, followed by the line after the match in file2 (so the title is a little misleading):
This is honestly beyond what I can do without spending the whole night on it, so I'm... (2 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
hi;
i am looking for simple search script that find string from file1 in file 2
file 1 contain a loot of string like:
204080111111111
204080222222222
204080333333333
in each row
and i would like to take the first row for example 204080111111111 from file1 and find it in file2 when it... (1 Reply)
Match column 3 in file1 to column 1 in file 2 and replace with column 2 from file2
file 1 sample
SNDK 80004C101 AT
XLNX 983919101 BB
NETL 64118B100 BS
AMD 007903107 CC
KLAC 482480100 DC
TER 880770102 KATS
ATHR 04743P108 KATS... (7 Replies)
Hi, i've two files (file1, file2) i want to take value (in column1) and search in file2 if the they match print the value from file2.
this is what i have so far.
awk 'FILENAME=="file1"{ arr=$1 }
FILENAME=="file2"
{print $0}
' file1 file2 (2 Replies)
