10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Im really beginner in this case, maybe someone can help me find the answer:
if my input file like this:
void main(int a, int b){
int x; double y;
printf("file");
}
and i want output like this:
int a
int b
int x
double y
A awk script that can parse only data tipe, im confused.
what... (2 Replies)
Discussion started by: radynaraya
2 Replies
2. Shell Programming and Scripting
I have 2 text files where I need to parse data from file 2 using the data from file 1. Below are my sample files
File 1 (tab delimited)
257 350
670 845
725 1025
767 820
...
....
....
file 2 (tab delimited)
220..450 TA AB650 ABCED
520..850 GA AB720 ABCDE
700..1100 TC AB820 ABCDE... (2 Replies)
Discussion started by: Lucky Ali
2 Replies
3. Shell Programming and Scripting
Hi,
I have 2 files
format of file 1 is:
a1
b2
a2
c2
d1
f3
format of file 2 is (tab delimited):
a1 1.2 0.5 0.06 0.7 0.9 1 0.023
a3 0.91 0.007 0.12 0.34 0.45 1 0.7
a2 1.05 2.3 0.25 1 0.9 0.3 0.091
b1 1 5.4 0.3 9.2 0.3 0.2 0.1
b2 3 5 7 0.9 1 9 0 1
b3 0.001 1 2.3 4.6 8.9 10 0 1 0... (10 Replies)
Discussion started by: Lucky Ali
10 Replies
4. Shell Programming and Scripting
Hi All,
I need some help to effectively parse out a subset of results from a big results file.
Below is an example of the text file. Each block that I need to parse starts with "Output of GENE for sequence file 100.fasta" (next block starts with another number). I have given the portion of... (8 Replies)
Discussion started by: Lucky Ali
8 Replies
5. Shell Programming and Scripting
Hi,
I have a folder that contains many (multiple) files
1.fasta
2.fasta
3.fasta
4.fasta
5.fasta
.
.
100's of files
Each such file have data in the following format
for example:
vi 1.fasta
>AB_1 gi|15835212|ref|NP_296971.1| preprotein translocase subunit SecE... (3 Replies)
Discussion started by: Lucky Ali
3 Replies
6. Shell Programming and Scripting
Hi All
I have two files:
file 1
>AB_1
MLKKPIIIGVTGGSGGGKTSVSRAILDSFPNARIAMIQHDSYYKDQSHMSFEERVKTNYDHPLAFDTDFM
IQQLKELLAGRPVDIPIYDYKKHTRSNTTFRQDPQDVIIVEGILVLEDERLRDLMDIKLFVDTDDDIRII
RRIKRDMMERGRSLESIIDQYTSVVKPMYHQFIEPSKRYADIVIPEGVSNVVAIDVINSKIASILGEV
>AB_2... (5 Replies)
Discussion started by: Lucky Ali
5 Replies
7. Shell Programming and Scripting
Hi all,
I wud like to get ur assistance in retrieving lines containing l1.My excel dataset contains around 8000 lines.I converted it into a text tab delimiter file and got the lines containing l1,My output is a list of lines containing l1 saved in a outfile.Some of d lines from my outfile s... (5 Replies)
Discussion started by: sayee
5 Replies
8. Shell Programming and Scripting
I have a file that is large and is broken up by groups of data. I want to take certain fields and display them different to make it easier to read. Given input file below:
2008 fl01 LAC 2589 polk doal
xx 2008q1 mx
sect 25698541
Sales 08 Dept group
lead1 ... (8 Replies)
Discussion started by: timj123
8 Replies
9. Shell Programming and Scripting
Hi,
I have file (FILE.tmp) having contents,
FILE.tmp
========
filename=menudata
records=0000000000037
ldbname=pinsys
timestamp=2005/05/14-18:32:33
I want to parse it bring a new file which will look like,
filename records ldbname timestamp... (2 Replies)
Discussion started by: Omkumar
2 Replies
10. Shell Programming and Scripting
Greetings All!!
I have a very peculiar problem where I have to parse a big text file and extract useful data out of it with starting and ending block pattern matching.
e.g. I have a input file like this:
sample data
block1
sample data
start
useful data
end
sample data
block2
sample... (5 Replies)
Discussion started by: arminder
5 Replies
SHUNIT2(1) SHUNIT2(1)
NAME
shunit2 - A unit test framework for shell scripts
SYNOPSIS
shunit2 unitfile
DESCRIPTION
shUnit2 is a xUnit unit test framework for Bourne based shell scripts, and it is designed to work in a similar manner to JUnit, PyUnit,
etc.. If you have ever had the desire to write a unit test for a shell script, shUnit2 can do the job.
You can either run shunit2 directly from the commandline and specify the unit file or directly source the shunit2 executable.
If you directly execute shunit2 and don't specify a unitfile shunit2 assumes a empty testfile and will return without an error message.
EXAMPLE
Simple script to test if 1 equals 1
#! /bin/sh
testEquality()
{
assertEquals 1 1
}
# load shunit2
. shunit2
Execute shUnit2 unit tests directly from the commandline
shunit2 /path/to/unit/file
OPTIONS
shunit2 does not support any commandline options at all. You can either source shunit2 to execute your unit tests or directly run shunit2
as a commandline script.
SEE ALSO
For more information see http://code.google.com/p/shunit2/ or have a look at the installed documentation in /usr/share/doc/shunit2/
AUTHOR
shunit2 was written by Kate Ward <kate.ward@forestent.com>. This manpage was written by Ulrich Dangel <mru@spamt.net>.
2.1.6 03/25/2012 SHUNIT2(1)