Detecting subset of a word

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1. UNIX for Beginners Questions & Answers

Cannot subset ranges from another range set

Ca21chr2_C_albicans_SC5314 2159343 2228327 Ca21chr2_C_albicans_SC5314 636587 638608 Ca21chr2_C_albicans_SC5314 5286 50509 Ca21chr2_C_albicans_SC5314 634021 636276 Ca21chr2_C_albicans_SC5314 1886545 1900975 Ca21chr2_C_albicans_SC5314 610758 613544...

2. Shell Programming and Scripting

How to check if file2 is a subset of file1?

In-order to check and print if file2 is a subset of file one i do the below. var1=$(cat //tmp/file1 | sort -u | wc) var2=$(cat /tmp/file2 /tmp/file1 | sort -u | wc) if ; then echo "file2 is a subset of file1 becoz var1 and var2 have the same values." fi However, i get the following error ...

3. Shell Programming and Scripting

How-to check if file1 a subset of file2 ?

I need to know if file1 is a subset of file2 i.e all the contents of file1 are present in file2 or not. Here is how i would do it. Read line by line file1 and grep every line in file2 in a for loop. any failing grep would means that it is not a subset. Is there a quicker or easier way...

4. UNIX for Advanced & Expert Users

How to extract subset file from dataset?

Hello I have a data set which looks like this : progeny sire dam gender 12 1 3 M 13 2 4 F 14 2 5 F 15 6 5 ...

5. UNIX for Dummies Questions & Answers

How to subset data?

Hi. I have a large data file. the first column has unique identifiers. I have approximately 5 of these files and they have varying number of columns in their rows. I need to extract ~300 of the rows in to a separate file. I'm not looking for something that would do all 5 files at once, but...

6. Shell Programming and Scripting

Creating subset of compilation errors

I am compiling a fortran program using gfortran and the result looks as below I want to write a bash or awk script that will scan the information and output only problems within a range of line numbers Example: If I specify the file createmodl.f08, start line 1000 and end line 1100, I will...

7. UNIX for Dummies Questions & Answers

how to get a subset of such a file

Dear all, I have a file lik below: n of row=420, n of letters in each row=100000 like below: there is no space between the letters. what I want is: the 75000th letter to the 85000th letter in each row. how to do that? thanks a lot! ...

8. UNIX for Dummies Questions & Answers

Find EXACT word in files, just the word: no prefix, no suffix, no 'similar', just the word

I have a file that has the words I want to find in other files (but lets say I just want to find my words in a single file). Those words are IDs, so if my word is ZZZ4, outputs like aaZZZ4, ZZZ4bb, aaZZZ4bb, ZZ4, ZZZ, ZyZ4, ZZZ4.8 (or anything like that) WON'T BE USEFUL. I need the whole word...

9. UNIX for Dummies Questions & Answers

Help with subset and if-then statements

Hello everyone. I'm new to the boards, I hope I can get and possibly give some help through these forums. I need some help. I have two CSV files, let's call them File A and File B. This is the structure for File A: ID, VAR1, VAR2, VAR3 - VAR50 (where the VAR 1-VAR50 are either 0 or 1) ...

10. Shell Programming and Scripting

How to extract a subset from a huge dataset

Hi, All I have a huge file which has 450G. Its tab-delimited format is as below x1 A 50020 1 x1 B 50021 8 x1 C 50022 9 x1 A 50023 10 x2 D 50024 5 x2 C 50025 7 x2 F 50026 8 x2 N 50027 1 : : Now, I want to extract a subset from this file. In this subset, column 1 is x10, column 2 is...

Shell Programming and Scripting