Run a program-print parameters to output file-replace op file contents with max 4th col
Hi Friends,
This is the only solution to my task. So, any help is highly appreciated.
I have a file
Now, I have another file by name
But, there is a program in our field that executes by taking this
Now, my task is this
1. Read input1.bed's each record
2. Feed it in the following way to the program, so that the program executes in a continuous loop for each record in input1.bed this way and generate the output files with each input1.bed's record as their name
3. For example, I consider the first output file -
.
4. Now, ignore the first three columns of the above output file, but consider the maximum fourth column value, which is 111.11 and replace the entire contents of my chr1_100_200_op.bed with just the file name, which will be this one
This is it. Please ask me as many questions as you have for a better solution. Thanks a ton for all your time.
For 3 and 4, you start with 3 lines and end with 1 line. Is this intended? I've assumed it's not, that you want 3 lines out for 3 lines in.
Hi Corona,
Thanks for your time.
For 3 and 4, usually the output file has thousands of records. But, I want to consider the maximum value of fourth column and print the filename as another column.
So, the three records will go out and only one record will remain, as in the example.
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a1~a2~a3~a4~a6~a7~a8
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