10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi, the following command works in the terminal no problem.
samtools view -h rawlib.bam | perl -ne '{ @line = split( /\s+/ ); $match = 0; while( $line =~ /(\d+)M/g ) { $match = $match + $1 } if( $match >= 80 || $_ =~ /^\@/ ) { print $_ } }' | java -Xmx12G -jar... (8 Replies)
Discussion started by: jdilts
8 Replies
2. Shell Programming and Scripting
Hi all,
Not sure if this should be in the programming forum, but I believe it will get more response under the Shell Programming and Scripting FORUM.
Am trying to write a customized df script in Perl and need some help with regards to using arrays and file handlers.
At the moment am... (3 Replies)
Discussion started by: newbie_01
3 Replies
3. Shell Programming and Scripting
so in unix this command works works and shows me a list of directories
find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt
but when i try running a perl script to run this command
my $query = 'find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt';... (2 Replies)
Discussion started by: kpddong
2 Replies
4. Shell Programming and Scripting
Does not work.
#!/usr/bin/perl
$etcdir = 'ls -l /etc';
print $etcdir;
#END
------------result--------
#perl -w abc123.pl
ls -l /etc
#
This method works.
#!/usr/bin/perl
$etcdir = system("ls -l /etc");
print $etcdir;
#END (2 Replies)
Discussion started by: dplinux
2 Replies
5. Shell Programming and Scripting
Hi Gurus,
I've a find command that gets the list of files from a source directory where the extension is not html, xml, jsp, shtml or htaccess. The below find command runs fine from the command prompt or in a shell script. I need to eventually run it in a PERL script and am getting the... (5 Replies)
Discussion started by: voorkey
5 Replies
6. Shell Programming and Scripting
Solaris 10
Korn shell ksh,
Hi there,
I have figured out to get yesterday's date which is using the below command:
TZ=GMT+24; date +%d-%b-%Y to get the format of 30-Sep-2008 and
TZ=GMT+24; date +%Y%m%d to get the format of 20080930.
I need this two format. In my perl script below I need... (4 Replies)
Discussion started by: bulkbiz
4 Replies
7. Shell Programming and Scripting
I am trying to use a script to replace the header of each file, whose filename are stored within the array $test, using the sed command within a Perl script as follows:
$count = 0;
while ( $count < $#test )
{
`sed -e 's/BIOGRF 321/BIOGRF 332/g' ${test} > 0`;
`cat 0 >... (2 Replies)
Discussion started by: userix
2 Replies
8. UNIX for Advanced & Expert Users
Hi All,
I am using the following command to invoke the shell script from a perl command.
perl -i.bak -pe'BEGIN { $cmd = "/opt/coreservices/tomcat-5.5.9/bin/digest.sh -a sha"; }
s/(password=")(*)/
$1.`$cmd $2|cut -d: -f2|tr -d "\n"`
/e
' $CATALINA_HOME/conf/tomcat-users.xml
I need... (1 Reply)
Discussion started by: nua7
1 Replies
9. Shell Programming and Scripting
i'm writing some simple scripts to help me learn perl.
why does the print command get called after the shell script is executed?
the purpose of the shell script is to simply echo to the screen "script run". which is does, but before the print command, you can clearly see the shell script is... (3 Replies)
Discussion started by: mjays
3 Replies
10. Shell Programming and Scripting
Hi Perl/UNIX experts,
I have a problem in running a shell script from my perl script (auto.pl).
I run the perl script using
perl auto.pl
from the shell prompt
The shell script picks the files in "input" folder and procesess it.
The shell script blue.sh has this code.
export... (16 Replies)
Discussion started by: hifake
16 Replies
