10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the bash below the out put of a process is written to input. What I am trying to do is read each line in the input and verify/check it for specific text (there are always 6 lines for each file and the specific text for each line is in the description). There will always be 6 lines in each... (5 Replies)
Discussion started by: cmccabe
5 Replies
2. Shell Programming and Scripting
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. Shell Programming and Scripting
In the perl one-liner below I am identifying the runs of 6a or 6A in each line starting with >. The code seems close but it prints each > line no matter if it has 6a or 6A in it. Only the line with the 6a or 6A needs to be printed.
So using the input file, only the >hg19_refGene_NM_001918_3... (10 Replies)
Discussion started by: cmccabe
10 Replies
4. Shell Programming and Scripting
In the file below I am trying to extract a specific instance of path, if the adjacent plugin": "/rundb/api/v1/plugin/49/. Thank you :).
file
"path": "/results/analysis/output/Home/Auto_user_S5-00580-4-Medexome_65_028/plugin_out/FileExporter_out.52", "plugin": "/rundb/api/v1/plugin/49/",... (8 Replies)
Discussion started by: cmccabe
8 Replies
5. Shell Programming and Scripting
I have a file with class c IP addresses that I need to match to a column and print the matching lines of another file.
I started playing with grep -if file01.out file02.out but I am stuck as to how to match it to a column and print the matching lines;
cat file01.out
10.150.140... (5 Replies)
Discussion started by: lewk
5 Replies
6. Shell Programming and Scripting
Hi,
I have a sample file as shown below, I am looking for sed or any command which prints the complete word only from the input file.
Ex:
$ cat "sample.log"
I am searching for a word which is present in this file
We can do a pattern search using grep but I need to cut only the word which... (1 Reply)
Discussion started by: mohan_kumarcs
1 Replies
7. Shell Programming and Scripting
Hi All,
I would like to print the content from the specific line of a file .
For example... i have file abc.txt which has 100 lines of code ,from this file i would like to print the content from 20,19,18th line......like that
Regards
Srikanth (4 Replies)
Discussion started by: srikanthg
4 Replies
8. Shell Programming and Scripting
Hi,
I am trying to print a specific line in a file through sed or awk. The line number will be passed as a parameter from the previous step. My code looks as below.
TEMP3=`sed -n '$TEMP2p' $FILEPATH/Log.txt`
$TEMP2, I am getting from the previous step which is a numerical value(eg:3).
... (2 Replies)
Discussion started by: satyasrin82
2 Replies
9. Shell Programming and Scripting
I'm having problems since few days ago, and i'm not able to make it works with a simple awk+grep script (or other way to do this).
For example, i have a input file1.txt:
cat inputfile1.txt
218299910417
1172051195
1172070231
1172073514
1183135117
1183135118
1183135119
1281440202
... (3 Replies)
Discussion started by: poliver
3 Replies
10. Shell Programming and Scripting
Hi guys,
I am new to AWK and unix scripting. Please see below my problem and let me know if anyone you can help.
I have 2 input files (example given below)
Input file 2 is a standard file (it will not change) and we have to get the name (second column after comma) from it and append it... (5 Replies)
Discussion started by: sksahu
5 Replies