10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am using the following script to search for and print minimum values for each individual Fields (3-14) for each unique id (Field 1). But when the field contains a "-99.99" ( I am ignoring "-99.99") and when the minimum value is the first line of a new id (Field 1), the output does not print Field... (13 Replies)
Discussion started by: ncwxpanther
13 Replies
2. Shell Programming and Scripting
Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
3 Replies
3. Shell Programming and Scripting
I am trying to use awk to print the unique entries in $2
So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output.
File.txt
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
5 Replies
4. Shell Programming and Scripting
Hi,
I have multiple files that each contain one column of strings:
File1:
123abc
456def
789ghi
File2:
123abc
456def
891jkl
File3:
234mno
123abc
456def
In total I have 25 of these type of file. (5 Replies)
Discussion started by: owwow14
5 Replies
5. Shell Programming and Scripting
Is it possible to modify file like this.
1. Remove all the duplicate names in a define column i.e 4th col
2. Count the no.of unique names separated by ";" and print as a 5th col
thanx in advance!!
Q
input
c1 30 3 Eh2
c10 96 3 Frp
c41 396 3 Ua5;Lop;Kol;Kol
c62 2 30 Fmp;Fmp;Fmp
... (5 Replies)
Discussion started by: quincyjones
5 Replies
6. Shell Programming and Scripting
Is it possible to remove redundant names in the 4th column?
input
cqWE 100 200 singapore;singapore
AZO 300 400 brazil;america;germany;ireland;germany
....
....
output
cqWE 100 200 singapore
AZO 300 400 brazil;america;germany;ireland (4 Replies)
Discussion started by: quincyjones
4 Replies
7. Shell Programming and Scripting
Hi everyone,
I have a file result.txt with records as following and another file mirna.txt with a list of miRNAs e.g. miR22, miR123, miR13 etc.
Gene Transcript miRNA
Gar Nm_111233 miR22
Gar Nm_123440 miR22
Gar Nm_129939 miR22
Hel Nm_233900 miR13
Hel ... (6 Replies)
Discussion started by: miclow
6 Replies
8. Shell Programming and Scripting
Print only records from file 2 that do not match file 1 based on criteria of comparing column 1 and column 6
Was trying to play around with following code I found on other threads but not too successful
Code:
awk 'NR==FNR{p=$1;$1=x;A=$0;next}{$2=$2(A?A:",,,")}1' FS=~ OFS=~ file1 FS="*"... (11 Replies)
Discussion started by: sigh2010
11 Replies
9. Shell Programming and Scripting
Hi,
snp.txt
CHR_A SNP_A BP_A_st BP_A_End CHR_B BP_B SNP_B R2 p-SNP_A p-SNP_B
5 rs1988728 74904317 74904318 5 74960646 rs1427924 0.377333 0.000740085 0.013930081
5 ... (12 Replies)
Discussion started by: genehunter
12 Replies
10. UNIX for Dummies Questions & Answers
Hello all,
Would appreciate if someone can help me out on the following requirement.
INPUT FILE:
--------------------------
TPS REPORT
abc def ghi
jkl mon pqr
stu vrs lll
END OF TPS REPORT
TPS REPORT
field1 field2 field3
field4 field5 field6 (8 Replies)
Discussion started by: hyennah
8 Replies