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extracting Number variable and the following digits.

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Top Forums Shell Programming and Scripting extracting Number variable and the following digits.
# 15  
Old 10-08-2012
Quote:
Originally Posted by emily


Cant we assign it to some variable? so that i can use that later.
for example, mycomplee task is fllowing:
Code:
 
geThose no, which your code pass
381,381,45,6,78,9,0,6,5,3-4

then perform command like this,
Code:
crab -resubmit 381,381,45,6,78,9,0,6,5,3-4

/i have to pass those no to this command. Smilie
Yes you can. Just do this..

Code:
Var_no=$(awk '/Jobs with Wrapper/ && $NF != 0{s=1}   /List of jobs/ && s{if(p){p=p","$NF}else{p=$NF};s=""}END{print p}' file)

#and then use in  your commands..

crab -resubmit $Var_no

# 16  
Old 10-08-2012
If you just want to resubmit your jobs, try
Code:
$(awk 'BEGIN {printf "crab -resubmit "} /Wrapper/ && $NF {getline; printf "%s%s", cm, $4; cm=","} END {print""}' file)

This will collect your job no.s and run crab to resubmit them.

BTW, would have been MUCH easier had you specified your problem correctly and entirely from the start...
# 17  
Old 10-08-2012
Thanks pamu and RudiC
I am sorry for the confusion.

But wondering wont it work like this:
Code:
 crab ntuplize_crab -status -c $SAMPLE >& $SAMPLE"_status.log" &
 jobNo=$(awk '/Jobs with Wrapper/ && $NF != 0{s=1}   /List of jobs/ && s{if(p){p=p","$NF}else{p=$NF};s=""}END{print p}' $SAMPLE"_status.log")
 echo ' crab ntuplize_crab -resubmit' $jobNo

Sams if for your script RudiC. It is not accepting this '$SAMPLE"_status.log'...????
# 18  
Old 10-08-2012
Use
Code:
 crab ntuplize_crab -status -c $SAMPLE >& $SAMPLE"_status.log" &

As this is submitted in background, wait for it to finish. Then launch
Code:
 $(awk 'BEGIN {printf "crab -resubmit "} /Wrapper/ && $NF {getline; printf "%s%s", cm, $4; cm=","} END {print""}' $SAMPLE"_status.log" )

Please be aware that if your file $SAMPLE"_status.log" does NOT conform to what you specified before, all of this won't work!
# 19  
Old 10-08-2012
Quote:
Originally Posted by RudiC
Use
Code:
 crab ntuplize_crab -status -c $SAMPLE >& $SAMPLE"_status.log" &

As this is submitted in background, wait for it to finish. Then launch
Code:
 $(awk 'BEGIN {printf "crab -resubmit "} /Wrapper/ && $NF {getline; printf "%s%s", cm, $4; cm=","} END {print""}' $SAMPLE"_status.log" )

Please be aware that if your file $SAMPLE"_status.log" does NOT conform to what you specified before, all of this won't work!
ohh, yes that was the issue..the earlier command was running background.
Cant I ask that when that $SAMPLE"_status.log" is done, then only execute the "crab -submit command "?

Else how much sleep time should I give..?? there is not fix time..
# 20  
Old 10-08-2012
How do you tell that log file is done?
You could wait for your bg process. If that's not satisfactory, you'll need a loop anyway to check for the log file, the PID, or what have you. Search this forum for posts regarding sth. like "sync with background processes"
# 21  
Old 10-08-2012
Quote:
Originally Posted by RudiC
How do you tell that log file is done?
You could wait for your bg process. If that's not satisfactory, you'll need a loop anyway to check for the log file, the PID, or what have you. Search this forum for posts regarding sth. like "sync with background processes"
thanks, have to find that. Else my complete script is complete waste.. Smilie
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