10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
In the awk below I am trying to use the file1 as a match to file2. In file2 the contents of $5,&6,and $7 (always tab-delimited) and are copied to the output under the header Quality metrics. The below executes but the output is empty. I have added comments to help and show my thinking. Thank you... (0 Replies)
Discussion started by: cmccabe
0 Replies
2. Shell Programming and Scripting
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
Discussion started by: cmccabe
0 Replies
3. Shell Programming and Scripting
In the awk below, what I am attempting to do is check each line in the tab-delimeted input, which has ~20 lines in it, for a keyword
SVTYPE=Fusion. If the keyword is found I am splitting $3 using the . (dot) and reading the portion before and after the dot in an array a.
If it does have that... (12 Replies)
Discussion started by: cmccabe
12 Replies
4. Shell Programming and Scripting
Hello,
I want to get the maximum value of each record separated by empty line based on the 3rd column of each row within each record?
Input:
A1 chr5D 634 7 82 707
A2 chr5D 637 6 82 713
A3 chr5D 637 5 82 713
A4 chr5D 626 1 82 704... (4 Replies)
Discussion started by: yifangt
4 Replies
5. Shell Programming and Scripting
I am trying to use awk to find all the $3 values in file2 that are between $2 and $3 in file1. If a value in $3 of file2 is between the file1 fields then it is printed along with the $6 value in file1. Both file1 and file2 are tab-delimited as well as the desired output. If there is nothing to... (4 Replies)
Discussion started by: cmccabe
4 Replies
6. Shell Programming and Scripting
In the attached file I am trying to use awk to extract multiple values and create the tab-delimited desired output.
In the output R_Index is a the sequential # and Pre_Enrichment is defaulted to ..
I can extract from the values to the side of the keywords, but most are above and I can not... (2 Replies)
Discussion started by: cmccabe
2 Replies
7. Shell Programming and Scripting
Hi all,
I am new to AWK and I am trying to solve a problem that is probably easy for an expert. Suppose I have the following data file input.txt:
20 35 43
20 23 54
20 62 21
20.5 43 12
20.5 33 11
20.5 89 87
21 33 20
21 22 21
21 56 87
I want to select from all lines having the... (4 Replies)
Discussion started by: naska
4 Replies
8. UNIX for Dummies Questions & Answers
Hi all !
If there is only one single value in a column (e.g. column 1 below), then return this value in the same output column.
If there are several values in the same column (e.g. column 2 below), then return the different values separated by "," in the output.
pipe-separated input:
... (11 Replies)
Discussion started by: lucasvs
11 Replies
9. Shell Programming and Scripting
If i have a log file record.txt, with 10 fields
- First field is datetime
- 7th field is status
- 8th filed is name
- The last field (10th) is epoch time of the first field
02/17/2012 1:47 PM||||||In Use|chicken||1329515230
02/17/2012 2:53 PM||||||Available|chicken||1329519195
02/17/2012... (4 Replies)
Discussion started by: sabercats
4 Replies
10. Shell Programming and Scripting
Hi,
I want to print certain fields from my data file depending on certain conditions. Somebody pls let me know how to send it to awk.
The command below is the one which I want to use in a shell script and this prints fine
cat ./datafile.dat | grep -i $SEARCH_STR | awk -F: '{ print $1 $2 $3... (5 Replies)
Discussion started by: maverix
5 Replies