10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
hi all,
trying this using shell/bash with sed/awk/grep
I have two files, one containing one column, the other containing multiple columns (comma delimited).
file1.txt
abc12345
def12345
ghi54321
...
file2.txt
abc1,text1,texta
abc,text2,textb
def123,text3,textc
gh,text4,textd... (6 Replies)
Discussion started by: shogun1970
6 Replies
2. Shell Programming and Scripting
Having a little trouble getting this to work just right.
I have xml files that i want to split some data.
I have 2 <name> tags within the file
I would like to take only the first tag and split the data.
tag example.
From this.
TAB<Name>smith, john</Name>
to
TAB<Name>smith,... (8 Replies)
Discussion started by: whegra
8 Replies
3. Shell Programming and Scripting
In the below file I am trying to grep or similar, all lines where only AF= is less than 0.4.. Thank you :).
grep
grep "AF=" ,+ .4 file
file
12 112036782 . T C 34.0248 PASS ... (3 Replies)
Discussion started by: cmccabe
3 Replies
4. Shell Programming and Scripting
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
Discussion started by: cmccabe
4 Replies
5. Shell Programming and Scripting
I hope this makes sense and is possible.
I am trying to match $1 of panel_genes.txt with $3 of RefSeqGene.txt and when a match is found the value in $6 of RefSeqGene.txt
Example: ACTA2 is $1 of panel_genes.txt
ACTA2 NM_001613.2
ACTA2 NM_001141945.1
awk 'FNR==NR {... (4 Replies)
Discussion started by: cmccabe
4 Replies
6. Shell Programming and Scripting
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
7. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
8. Shell Programming and Scripting
Hello,
I'm new in Shell scripting but i should write a script, which inserts the license header out of a txt-File into the files in our Projekt. For the Java classes it runs without Problems but for XML files not. At xml-files i have to put the license Header after the xml-Header (?xml... (1 Reply)
Discussion started by: PhoenixONE
1 Replies
9. Shell Programming and Scripting
Hi all
I have two files X.txt and Y.txt. Both file contains same number of sentences. The content of X.txt is
The filter described above may be combined.
and the content of Y.txt is
The filter describ+ed above may be combin+ed.
Some of the words are separated with "+"... (2 Replies)
Discussion started by: my_Perl
2 Replies
10. Programming
I have searched the internet (including these forums) and perhaps I'm not using the right wording.
What I'm looking for is a function (preferably C) that analyzes the similitude of two numerical or near-numerical values, and returns either a true/false (match/nomatch) or a return code that... (4 Replies)
Discussion started by: marcus121
4 Replies
Tcl_Backslash(3) Tcl Library Procedures Tcl_Backslash(3)
__________________________________________________________________________________________________________________________________________________
NAME
Tcl_Backslash - parse a backslash sequence
SYNOPSIS
#include <tcl.h>
char
Tcl_Backslash(src, countPtr)
ARGUMENTS
char *src (in) Pointer to a string starting with a backslash.
int *countPtr (out) If countPtr is not NULL, *countPtr gets filled in with number of characters in the backslash sequence, includ-
ing the backslash character.
_________________________________________________________________
DESCRIPTION
The use of Tcl_Backslash is deprecated in favor of Tcl_UtfBackslash.
This is a utility procedure provided for backwards compatibility with non-internationalized Tcl extensions. It parses a backslash sequence
and returns the low byte of the Unicode character corresponding to the sequence. Tcl_Backslash modifies *countPtr to contain the number of
characters in the backslash sequence.
See the Tcl manual entry for information on the valid backslash sequences. All of the sequences described in the Tcl manual entry are sup-
ported by Tcl_Backslash.
SEE ALSO
Tcl(n), Tcl_UtfBackslash(3)
KEYWORDS
backslash, parse
Tcl 8.1 Tcl_Backslash(3)