10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello scripting geniusii! I come to kneel before the alter of your wisdom!
I am looking to take a keyword and replace characters within that keyword and add them to a string variable. I would like this to only go through however many characters the word has, which may vary in size.
... (10 Replies)
Discussion started by: ghaniba
10 Replies
2. Shell Programming and Scripting
I have a fasta file like this one:
>ID1
AAAAAA
>ID2
TTTTTT
And I am using this sed script to increase the count sequence
sed '/^>/s/.*//;/^$/=;/^$/d' text.txt | sed 's/.*/echo ">seq" \$(( ( & + 1 )\/2 ))/e'
I get the desired output:
>seq 1
AAAAAA
>seq 2
TTTTTT
However, this... (9 Replies)
Discussion started by: Xterra
9 Replies
3. Shell Programming and Scripting
Hello,
I'm looking for advice on how to optimize this bash script, currently i use the shotgun approach to avoid file io/buffering problems of forks trying to write simultaneously to the same file. i'd like to keep this as a fairly portable bash script rather than writing a C routine.
in a... (8 Replies)
Discussion started by: f77hack
8 Replies
4. Shell Programming and Scripting
Hi all,
I have a moderate size (300 lines) BASH Shell script that performs various tasks on different source reports (CSV files). One of the tasks that it performs, is to use SED to replace 'non-conforming' titles with conformant ones. For example "How to format a RAW Report" needs to become... (3 Replies)
Discussion started by: richardsantink
3 Replies
5. Shell Programming and Scripting
Dear All,
could you please help me to remove \n characters after all other replacements have been done as in the code below:
{
#remove punctuation and starting whitespaces
gsub("]"," ");
$1=$1;
}
{
#print lines containing 'whatever'
if ($1=="whatever")
{print}
#print... (3 Replies)
Discussion started by: shivacoder
3 Replies
6. UNIX for Dummies Questions & Answers
Hello all. I am a beginner UNIX user who is using UNIX to work on a bioinformatics project for my university.
I have a bit of a complicated issue in trying to use sed (or awk) to "find and replace" bases (letters) in a genetics data spreadsheet (converted to a text file, can be either... (3 Replies)
Discussion started by: Mince
3 Replies
7. UNIX for Dummies Questions & Answers
I have a text file where I want to use sed to do multiple replacements all at once (i.e. with a single command) . I want to convert all AA's to 0, all AG's to 1 and all GG's to 2. How do I go about doing that? Thanks! (2 Replies)
Discussion started by: evelibertine
2 Replies
8. Shell Programming and Scripting
Hey guys,
I need to first generate some random characters, which I am already doing perfectly as follows:
randomize=`cat /dev/urandom | tr -dc "a-z0-9" | fold -w 6 | head -n 1`
This is where I am stuck...I need to sed replace some static values with those random characters, but I need each... (4 Replies)
Discussion started by: holyearth
4 Replies
9. Shell Programming and Scripting
Hi,
I have a requirement as below
Input
Jacuzzi,"Jet Rings, Pillows",Accessory,Optional,,9230917,69094,,P556805,69094,FALSE,1,0,,
Jacuzzi,"Jet Rings, Pillows, Skirt/Apron",Accessory,Optional,,9230917,69094,,P556805,69094,FALSE,1,0,,
Output
Jacuzzi,"Jet Rings!@%... (6 Replies)
Discussion started by: kewk
6 Replies
10. UNIX for Dummies Questions & Answers
Hi,
I have a script which removes 2 header records and 1 trailer record in a list of files. The commands doing the actions are
sed '1,2d' $file > tempfile1.dat
sed '$d' < tempfile1.dat > $output.txt
Its working fine for all records except a file having size=1445509814 and number of... (2 Replies)
Discussion started by: ayanbiswas
2 Replies