10 More Discussions You Might Find Interesting
1. Programming
I have reviewed many examples on-line about running another process (either PERL or shell command or a program), but do not find any usefull for my needs way. (Reviewed and not useful the system(), 'back ticks', exec() and open())
I would like to run another PERL-script from first one, not... (1 Reply)
Discussion started by: alex_5161
1 Replies
2. Programming
https://www.unix.com/programming/252468-perl-script-create-football-formation.html https://www.unix.com/members/43551.html, it is not repeated question. please read it before u block my question. Unblock it for me. Thanks:mad: (0 Replies)
Discussion started by: Tzeronone
0 Replies
3. Shell Programming and Scripting
Not sure what I am doing wrong here, but I can print the list with no issue. Just a blank screen with the 'do'.
#!/usr/bin/perl
open FILE, "upslist.txt";
while ($line=<FILE>){
if ($line=~/^(.*?),(.*?)$/){
#print "ups:$1 string:$2\n";
do 'check_snmp_mgeups-0.1.pl -H $1 -C $2';
} ... (1 Reply)
Discussion started by: mrlayance
1 Replies
4. Shell Programming and Scripting
Hi All,
I am aware that html tags can be embedded in cgi script as below.. In the same way is it possible to embed the below javascript in perl cgi script ??
print("<form action="action.htm" method="post" onSubmit="return submitForm(this.Submitbutton)">");
print("<input type = "text"... (1 Reply)
Discussion started by: scriptscript
1 Replies
5. Shell Programming and Scripting
Hi Folks,
I have 2 perl scripts and I need to execute 2nd perl script from the 1st perl script in WINDOWS.
In the 1st perl script that I had, I am calling the 2nd script
main.pl
===========
print "This is my main script\n";
`perl C:\\Users\\sripathg\\Desktop\\scripts\\hi.pl`;
... (3 Replies)
Discussion started by: giridhar276
3 Replies
6. Shell Programming and Scripting
I am trying to run a perl script which needs input arguments from a parent perl script, but doesn't seem to work. Appreciate your help in this regard.
From parent.pl
$input1=123;
$input2=abc;
I tried calling it with
system("/usr/bin/perl child.pl $input1 $input2");
and
`perl... (1 Reply)
Discussion started by: grajp002
1 Replies
7. Shell Programming and Scripting
How can i print the output of a perl script on a unix console and redirect the same in a log file under same directory simultaneously ?
Like in Shell script, we use tee, is there anything in Perl or any other option ? (2 Replies)
Discussion started by: butterfly20
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8. Shell Programming and Scripting
Hello All,
This is my situation and I am new to perl scripting so I am trying to figure out the best way to tackle this problem. I need help in creating the logic to analyze the data.
Problem: I need to access an oracle database, gather information from a specific query and then analyze... (0 Replies)
Discussion started by: jacktravine
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9. Shell Programming and Scripting
I am trying to use a script to replace the header of each file, whose filename are stored within the array $test, using the sed command within a Perl script as follows:
$count = 0;
while ( $count < $#test )
{
`sed -e 's/BIOGRF 321/BIOGRF 332/g' ${test} > 0`;
`cat 0 >... (2 Replies)
Discussion started by: userix
2 Replies
10. Shell Programming and Scripting
LOGFILE
========
My name is: ?Anthony Perkins
I am an American citizen.
My name is: ?Donte Suarez
I am a Spanish citizen.
My name is: ? lenny Davis
I am an Australian citizen.
My name is: ?allen rigodeau
I am a French citizen.
My name is: ? manuel williams
I am a Mexican citizen.
... (2 Replies)
Discussion started by: gholdbhurg
2 Replies
BP_GENBANK2GFF(1p) User Contributed Perl Documentation BP_GENBANK2GFF(1p)
NAME
bp_genbank2gff.pl - Load a Bio::DB::GFF database from GENBANK files.
SYNOPSIS
% bp_genbank2gff.pl -d genbank -f localfile.gb
% bp_genbank2gff.pl -d genbank --accession AP003256
% bp_genbank2gff.pl --accession AP003256 --stdout
DESCRIPTION
This script loads a Bio::DB::GFF database with the features contained in a either a local genbank file or an accession that is fetched from
genbank. Various command-line options allow you to control which database to load and whether to allow an existing database to be
overwritten.
The database must already have been created and the current user must have appropriate INSERT and UPDATE privileges. The --create option
will initialize a new database with the appropriate schema, deleting any tables that were already there.
COMMAND-LINE OPTIONS
Command-line options can be abbreviated to single-letter options. e.g. -d instead of --database.
--create Force creation and initialization of database
--dsn <dsn> Data source (default dbi:mysql:test)
--user <user> Username for mysql authentication
--pass <password> Password for mysql authentication
--proxy <proxy> Proxy server to use for remote access
--stdout direct output to STDOUT
--adaptor <adaptor> adaptor to use (eg dbi::mysql, dbi::pg, dbi::oracle) --viral the genome you are loading is viral (changes tag
choices)
--source <source> source field for features ['genbank']
EITHER --file Arguments that follow are Genbank/EMBL file names
OR --gb_folder What follows is a folder full of gb files to process OR --accession Arguments that follow are genbank accession numbers
(not gi!)
OR --acc_file Accession numbers (not gi!) in a file (one per line, no punc.)
OR --acc_pipe Accession numbers (not gi!) from a STDIN pipe (one
per line)
SEE ALSO
Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl
AUTHOR
Scott Cain, cain@cshl.org
Copyright (c) 2003 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
perl v5.14.2 2012-03-02 BP_GENBANK2GFF(1p)
