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Perl program for find one entry and put in different file

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Top Forums Shell Programming and Scripting Perl program for find one entry and put in different file
# 15  
Old 05-04-2012
ok thanks kamraj
I got it now but its not coming as output file separately with all IDs and I cant copy all Uniprot IDs from Unix shell..

And, Video wasn't working in my system I checked now on my iPAD so here it is code tag..thanks for reply

Code:
$ perl -lane 'print $F[-1] if $_=~/UniProt ID/' Uniprot

---------- Post updated at 02:33 AM ---------- Previous update was at 02:31 AM ----------

And, I was planning to do this in perl script in perl file is it possible?
# 16  
Old 05-04-2012
redirect the output to another file

Code:
perl -lane 'print $F[-1] if $_=~/UniProt ID/' input.txt  > output.txt

read basics about the perl ( search in google )
# 17  
Old 05-04-2012
The output file is still blank file without any output

Code:
perl -lane 'print $F[-1] if $_=~/UniProt ID/' input.txt  > output.txt

# 18  
Old 05-04-2012
As per the below code

1) your input file name is test.txt
2) your output file name is output.txt

When you are saying "its not working", "no output", etc....

Always post the command which you tried.

Code:
 
$ cat test.txt 
TTDS00001 Antagonist GSK233705 DCL000823
TTDS00001 Antagonist NVA237 DCL000901
TTDS00001 Antagonist Org-23366 DCL000911
TTDS00001 Antagonist OrM3 DCL000913
TTDS00001 Multitarget Org-23366 DCL000911
TTDS00001 Antagonist Aprophen DNC000245
TTDS00001 Antagonist Benactyzine DNC000293
TTDS00001 Antagonist Hyoscine DNC000757
TTDS00001 Antagonist Hyoscyamine sulfate DNC000758
TTDS00001 Antagonist Ipratropium bromide DNC000806
TTDS00001 Agonist Muscarine DNC000970
TTDS00001 Agonist RS 86 DNC001236
TTDS00001 Target Validation TTDS00001
TTDS00002 UniProt ID P11229
TTDS00002 Name Muscarinic acetylcholine receptor M1
TTDS00002 Type of target Successful target
TTDS00002 Synonyms M1 receptor
TTDS00002 Disease Alzheimer's disease
TTDS00002 Disease Bronchospasm (histamine induced)
TTDS00002 Disease Cognitive deficits
TTDS00002 Disease Schizophrenia
TTDS00002 Function The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase.................. so on for TTD 03/04/..14447

$ perl -lane 'print $F[-1] if $_=~/UniProt ID/' test.txt > output.txt
 
$ cat output.txt 
P11229

# 19  
Old 05-04-2012
Okk now I got the Results..Indeed so many thanks for u...

actually I was not writing star before input and after output file name
now i changed file name as input Uniprot and output Uniprot2 I got results.

Code:
bash-3.2$  perl -lane 'print $F[-1] if $_=~/UniProt ID/' * Uniprot> Uniprot2*

So may thanks once again...now I cant print here whole because if I will run gain it says Uniprot2 ambiguous redirect.. so but I got results
# 20  
Old 05-04-2012
Answer my questions.

1) What is your input file name ? ( is it multiple files or only one file )
2) What should be your outputfile name ?
# 21  
Old 05-04-2012
Request to check
Hi

My Input file name is Uniprot(I changed it it was test earlier)

My output file name is Uniprot2 (all list of Uniprot IDs)

My input file is single file.. I have got results many thankd for that

Now I have to compare 2 files which means 2 files with common entries in same column and separate those common entries in a diferent file as well right before those entries common so that I can separat common and Uncommon entries in rows in 2 different files. Is it possible

For eg.

one file
Code:
name1   1    2 
name2    3   4
name3     5   6

second file
Code:
name1   1    2
name2    3   4
name6     8    9

output file
Code:
name1   1    2 common
name2    3   4  common
name6     8    9  not common

Moderator's Comments:
Mod Comment Also code tags for samples please
Last edited by Scrutinizer; 05-04-2012 at 06:36 AM.. Reason: extra code tags
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