I was trying to do something like this [without any effect]
Code:
for i in snap*.pdb.OW.msd; do
j=$((i+1))
join $i $j > $i_$j
done
where the input and output files would be automated for numbers from 0000 to 5000 or more - so the script would join files with n and n+1 in the names.
Any suggestions on how to do this or what kind of command should I use?
input1
I have one more question - I'm using this script to count an average but it counts it after every line. How should I change, so that it would only overwrite one line with the ultimate average?
Code:
awk '{s+=$1}{print "Average for "FILENAME "=", s/NR}' name0000+00001>OUT
input
Code:
5,79846
0,042025
9,28421
1,38768
output
HTML Code:
Average for msd_name0000+00001= 5,79846
Average for name0000+00001= 2,92024
Average for name0000+00001= 5,04156
Average for name0000+00001= 4,12809
If your system really does support enough arguments:
Code:
# Set $1, $2, ... to the list of files you want.
set -- snap[0-9][0-9][0-9][0-9].pdb.OW.msd
# Loop while there's more than 1 file in the list.
while [ "$#" -gt 1 ]
do
join "$1" "$2" > "$1"_"$2"
# Ditch $1, set $1=$2, $2=$3, ...
shift
done
As for your average, to do it at the end, use END:
Code:
awk '{s+=$1} END {print "Average for "FILENAME "=", s/NR}' name0000+00001>OUT
First part works like a charm, thanks!
I have a little problem with the second part- I didn't explane it well enough - sorry!
The OUT file should be storage file for all calculated averages, and it would be nice if I could use script like this:
Code:
awk '{s+=$1} END {print "Average for "FILENAME "=", s/NR}' calc_"$1"_"$2">OUT
and at the end the file would look like this:
Quote:
Average for calc_snap0000.pdb.OW.msd_snap0001.pdb.OW.msd= 0,276676
Average for calc_snap0001.pdb.OW.msd_snap0002.pdb.OW.msd= 0,776676
Average for calc_snap0002.pdb.OW.msd_snap0003.pdb.OW.msd= 0,576676
Average for calc_snap0003.pdb.OW.msd_snap0004.pdb.OW.msd= 5,276676
Average for calc_snap0004.pdb.OW.msd_snap0005.pdb.OW.msd= 3,276676
Average for calc_snap0005.pdb.OW.msd_snap0006.pdb.OW.msd= 0,376676
It looks like the 0002 file has every line unique...
Quote:
One more thing... After running the script I noticed that unfortunately the join command doesn't work properly - joint files 0001_0002 and 0002_0003 are empty, probably the 0002 file causes problems.
Quote:
Average for calc_name0000.pdb.OW.msd_name0001.pdb.OW.msd= 58,8237
Average for calc_name0001.pdb.OW.msd_name0002.pdb.OW.msd=
Average for calc_name0002.pdb.OW.msd_name0003.pdb.OW.msd=
Average for calc_name0003.pdb.OW.msd_name0004.pdb.OW.msd= 67,8626
Average for calc_name0004.pdb.OW.msd_name0005.pdb.OW.msd= 63,5823
Here are examples of files that are going into the join command:
Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted!
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