10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
Discussion started by: cmccabe
6 Replies
2. UNIX for Dummies Questions & Answers
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Discussion started by: pathunkathunk
4 Replies
3. Shell Programming and Scripting
Good day,
I have a list of regular expressions in file1. For each match in file2, print the containing line and the line after.
file1:
file2:
Output:
I can match a regex and print the line and line after
awk '{lines = $0} /Macrosiphum_rosae/ {print lines ; print lines } '
... (1 Reply)
Discussion started by: pathunkathunk
1 Replies
4. Shell Programming and Scripting
HI,
I would like a little help on writing a if statement.
What i have so far is:
#!/bin/bash
FILE1=path/to/file1
FILE2=path/to/file2
echo ${FILE1} ${FILE2}
if ]
then
echo file1 and file2 not found
else
echo FILE ok
fi (6 Replies)
Discussion started by: techy1
6 Replies
5. Shell Programming and Scripting
Hi guys!
I'm trying to write something to find each line of file1 into file2, if line is found return YES, if not found return NO. The result can be written to a new file.
Can you please help me out?
FILE1 INPUT:
WATER
CAR
SNAKE
(in reality this file has about 600 lines each with a... (2 Replies)
Discussion started by: demmel
2 Replies
6. UNIX for Dummies Questions & Answers
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Discussion started by: pathunkathunk
3 Replies
7. Shell Programming and Scripting
Hi
I started to learn bash a week ago. I need filter the strings from the last column of a "file2" that match with a column from an other "file1"
file1:
chr10100036394-100038350AK077761
chr10100041065-100046547AK032226
chr10100041065-100046547AK016270
chr10100041065-100046547AK078231
...... (6 Replies)
Discussion started by: geparada88
6 Replies
8. Shell Programming and Scripting
Hello, I am new to shell scripting and i need to create a script with the following directions and I can not figure it out.
Create a shell script called newest.bash that takes two filenames as input arguments ($1 and $2) and prints out the name of the newest file (i.e. the file with the... (1 Reply)
Discussion started by: mandylynn78
1 Replies
9. Shell Programming and Scripting
Hello,
I have two files that I need to compare and print out the line from file2 that has the first 6 fields matching the first 6 fields in file1. Complicating this are the following restrictions
1. file1 is only a few thousand lines at most and file2 is greater than 2 million
2. I need to... (7 Replies)
Discussion started by: gillesc_mac
7 Replies
10. Shell Programming and Scripting
Hi, i've two files (file1, file2) i want to take value (in column1) and search in file2 if the they match print the value from file2.
this is what i have so far.
awk 'FILENAME=="file1"{ arr=$1 }
FILENAME=="file2"
{print $0}
' file1 file2 (2 Replies)
Discussion started by: myguess21
2 Replies