10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Input file
4CL1 O24145 CoA1
4CL1 P31684 CoA1
4CL1 Q54P77 CoA_1
73 O36421 Unknown
4CL3 Q9S777 coumarate
4CL3 Q54P79 coumarate
4CL3 QP7932 coumarate
Desired output result
4CL1 O24145#P31684 CoA1
4CL1 Q54P77 CoA_1
73 O36421 Unknown
4CL3 Q9S777#Q54P79#QP7932 coumarate
I... (5 Replies)
Discussion started by: perl_beginner
5 Replies
2. Shell Programming and Scripting
Input file:
bv|111259484|pir||T49736_real_data
bv|159484|pir||T9736_data_figure
bv|113584|prf|T4736|truth
bv|113584|pir||T4736_truth
Desired output:
bv|111259484|pir|T49736|real_data
bv|159484|pir|T9736|data_figure
bv|113584|prf|T4736|truth
bv|113584|pir|T4736|truth
Once the... (8 Replies)
Discussion started by: perl_beginner
8 Replies
3. Shell Programming and Scripting
Input file
data_2 USA
data_2 JAPAN
data_3 UK
data_4 Brazil
data_5 Singapore
data_5 Indo
data_5 Thailand
data_6 China
Desired output file
data_2 USA/JAPAN
data_3 UK
data_4 Brazil
data_5 Singapore/Indo/Thailand
data_6 China
I would like to merge all data content that share same... (2 Replies)
Discussion started by: perl_beginner
2 Replies
4. Shell Programming and Scripting
Input file:
58227131
50087390
57339526
40578034
65348841
55614853
64363217
44178559
Desired output file:
58227131 50087390
57339526 40578034
65348841 55614853
64363217 44178559
Command that I try: (4 Replies)
Discussion started by: perl_beginner
4 Replies
5. Shell Programming and Scripting
input file:
hsa-miR-4726-5p
Score
hsa-miR-483-5p
Score
hsa-miR-125b-2*
Score
hsa-miR-4492
hsa-miR-4508
hsa-miR-4486
Score
Desired output file:
hsa-miR-4726-5p Score hsa-miR-483-5p Score hsa-miR-125b-2* Score hsa-miR-4492 hsa-miR-4508 hsa-miR-4486 Score ... (6 Replies)
Discussion started by: perl_beginner
6 Replies
6. Shell Programming and Scripting
I have a file which have data like
A.txt
a
1Jan I am in a1.
1Jan I was born.
2Jan I am here.
3Jan I am in a3.
b
1Jan I am in b1.
c
2Jan I am in c2.
d
2Jan I am in d2.
5jan I am in d5.
date in the file might be vary evertime. (9 Replies)
Discussion started by: samkhu
9 Replies
7. Shell Programming and Scripting
Input data:
>sample_1
WETYUPVLGK
DGGHHHWETY
QPERTTGGLO
>sample_2
WRRTTOOLLP
MKMKNJUTYE
DLGLTTOC
.
.
Desired output:
>sample_1
WETYUP
VLGKDG
GHHHWE (8 Replies)
Discussion started by: patrick87
8 Replies
8. Shell Programming and Scripting
Can anyone help me with a shell script that can do the following:
I have a data in fasta format (first line is the header, followed by a sequence of characters).
>ALLLY
GGCCCCTCGAGCCTCGAACCGGAACCTCCAAATCCGAGACGCTCTGCTTATGAGGACCTC
GAAATATGCCGGCCAGTGAAAAAATCTTGTGGCTTTGAGGGCTTTTGGTTGGCCAGGGGC... (5 Replies)
Discussion started by: manishabh
5 Replies
9. Shell Programming and Scripting
I am new to Perl. I need to reformat a data file as the last part of a script I am working on. I am stuck on this.
Here is the current format:
CUSTOMER Filename 09/04/07-08:49
CUSTOMER Filename 09/04/07-08:52
CUSTOMER Filename 09/04/07-08:52
CUSTOMER2 Filename 09/04/07-08:49
CUSTOMER2... (3 Replies)
Discussion started by: flood
3 Replies
10. Shell Programming and Scripting
I am trying to write an awk program to reformat a data table and convert the date to julian time. I have all the individual steps working, but I am having some issues joing them into one program. Can anyone help me out? Here is my code so far:
# This is an awk program to convert the dates from... (4 Replies)
Discussion started by: climbak
4 Replies