10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
#!/bin/bash
echo -n "Enter number of sanger patients : "; read id
perl -ne 'chomp; system ("perl table_annovar.pl $_ humandb/ -buildver hg19 -protocol refGene,popfreq_all,common,clinvar,clinvarsubmit,clinvarreference -operation g,f,f,f,f,f -otherinfo")' < file.txt
I have the above script... (7 Replies)
Discussion started by: cmccabe
7 Replies
2. Shell Programming and Scripting
Hi All,
There is a code like below in my script
###############################################
###Create Directories and Sub-Directories
###############################################
dpdir=DP_FROM_${from}_TO_${to}
mkdir $dpdir
cd $dpdir
mkdir AWQM WFCONTROLLER PROVCO PRISM
... (1 Reply)
Discussion started by: pvmanikandan
1 Replies
3. UNIX for Dummies Questions & Answers
Hi,
How do i change the permission to read/write to a windows directory? (1 Reply)
Discussion started by: lg123
1 Replies
4. Shell Programming and Scripting
I am trying to do the following task :
export ENV=aaa
export ENV_PATH=$(cd /apps | ls | grep $ENV)
However, it's not working. What's the way to change to directory and search some file in that directory in single command
Please help. (2 Replies)
Discussion started by: saurau
2 Replies
5. UNIX for Dummies Questions & Answers
Hi,
I Installed mysql on my CentOS 6.2 Server. But when I tried to change the location of /var/lib/mysql to another directory. I can't start the mysql. Below is what I've done
yum install mysql mysql-server mysql-devel
mkdir /path/to/new/
cp -R /var/lib/mysql /path/to/new
chown -R... (1 Reply)
Discussion started by: ganitolngyundre
1 Replies
6. AIX
Dear all expects,
I have a security problem that I would like to resolve.
I need to create a user ID in my AIX 5.3 environment and to point the login to a specific directory for FTP purposes. There is only 2 directories that I can allow the user ID to perform read/write. I would like to prevent... (2 Replies)
Discussion started by: kwliew999
2 Replies
7. Shell Programming and Scripting
I have a simple shell script that prompts the user to enter a directory to navigate to.
What i want it to do and i don't know how to do this is if the directory is invalid automatically navigate to the home directory.
echo "enter a directory to navigate to:"
read directory
cd $directory... (6 Replies)
Discussion started by: icelated
6 Replies
8. UNIX for Dummies Questions & Answers
Hi I have abc_ahb_one.v
abc_ahb_two.v
abc_ahb_three.v
........l
like this
-----upto
abc_ahb_ninety.v in some directory.
I need to change those file names to like below.
... (5 Replies)
Discussion started by: praneethk
5 Replies
9. UNIX for Dummies Questions & Answers
I have a directory that is existing under my root dir of the FTP server. The DIR name is 'Software Patch'. I want to move in to that DIR to download some patches. But, when I issued a command 'cd SOftware Patch', the system said that it cannot find the dir 'Software'. I tried all possible ways like... (2 Replies)
Discussion started by: vskr72
2 Replies
10. Shell Programming and Scripting
Hi all,
I'm trying to wirte a small shell script in Linux. My script has the flow like,
cmd1
cmd2
cd testdata
cmd3
After exiting the program, the CWD remains the same as where I execute the program. I need it to be changed to the latest updated directory in the program. How can I do... (1 Reply)
Discussion started by: vadivel
1 Replies