10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am trying to remove all the lines and spaces where the count in $4 or $5 is greater than 1 (more than 1 letter). The file and the output are tab-delimited. Thank you :).
file
X 5811530 . G C NLGN4X
17 10544696 . GA G MYH3
9 96439004 . C ... (1 Reply)
Discussion started by: cmccabe
1 Replies
2. Shell Programming and Scripting
I am trying to cut a range of fields in awk. The below seems to work for removing field 50, but what is the correct syntax for removing a range ($50-$62). Thank you :).
awk
awk 'BEGIN{FS=OFS="\t"}{$50=""; gsub(/\t\t/,"\t")}1' test.vcf.hg19_multianno.txt > output.csv
Maybe:
awk... (6 Replies)
Discussion started by: cmccabe
6 Replies
3. Shell Programming and Scripting
Hello everyone, I have a dataset that looks something like:
1 3
2 2
3 4,5
4 3:9
5 5,9
6 5:6
I need to remove the rows that contain a comma in the second column and I'm not sure how to go about this. Here is an attempt.
awk 'BEGIN {FS=" "} { if ($2!==,) print }'Any help is appreciated. (5 Replies)
Discussion started by: Rabu
5 Replies
4. Shell Programming and Scripting
In a folder I'll several times daily receive new files that I want to combine into one big file, without any duplicate rows.
The file name in the folder will look like e.q:
MissingData_2014-08-25_09-30-18.txt
MissingData_2014-08-25_09-30-14.txt
MissingData_2014-08-26_09-30-12.txt
The content... (9 Replies)
Discussion started by: Bergans
9 Replies
5. Shell Programming and Scripting
Hello,
I am trying to eliminate rows where the first field is duplicated, leaving the row where the last field is "NET".
Data file:
345234|22.34|LST
546543|55.33|LST
793929|98.23|LST
793929|64.69|NET
149593|49.22|LST
Desired output:
345234|22.34|LST
546543|55.33|LST... (2 Replies)
Discussion started by: palex
2 Replies
6. Shell Programming and Scripting
Hi,
I have files with this kind of format (separator is space):
A1 B1 C1 D1 E1 F1 D1 C1 G1 H1
A2 B2 C2 D2 E2 F2 D2 C2 G2 H2
A3 B3 C3 D3 E3 F3 G3 D3 C3 H3
A4 B4 C4 D4 E4 F4 G4 D4 C4 H4
I want the output to be:
A1 B1 E1 F1 G1 H1
A2 B2 E2 F2 G2 H2
A3 B3 E3 F3 G3 H3
A4 B4 E4 F4 G4... (12 Replies)
Discussion started by: Gr4wk
12 Replies
7. Shell Programming and Scripting
Hi, if i have a file like this:
Query=1
a
a
b
c
c
c
d
Query=2
b
b
b
c
c
e
.
.
. (7 Replies)
Discussion started by: the_simpsons
7 Replies
8. Shell Programming and Scripting
Hello,
I met a challenge to extract part of the table. I'd like to grep the first three matches based on field1 and field2. Input:
D A 92.85 1315 83 11
D A 95.90 757 28 3
D A 94.38 480 20 7
D A 91.21 307 21 6
D A 94.26 244 ... (6 Replies)
Discussion started by: yifangt
6 Replies
9. Shell Programming and Scripting
Input file:
hcmv-US25-2-3p hsa-3160-5
hcmv-US33 hsa-47
hcmv-UL70-3p hsa-4508
hcmv-UL70-3p hsa-4486
hcms-US25 hsa-360-5
hcms-US25 hsa-4
hcms-US25 hsa-458
hcms-US25 hsa-44812
.
.
Desired Output file:
hcmv-US25-2-3p hsa-3160-5
hcmv-US33 hsa-47
hcmv-UL70-3p hsa-4508
hsa-4486... (3 Replies)
Discussion started by: perl_beginner
3 Replies
10. Shell Programming and Scripting
i have the long file more than one ns and www and mx in the line like .
i need the first ns record and first www and first mx from line .
the records are seperated with tthe ; i am try ing in awk scripting not getiing the solution.
... (4 Replies)
Discussion started by: kiranmosarla
4 Replies