Awk script


 
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# 15  
Old 02-22-2011
Code:
awk '/gene/{split($(NF-1),a,"=");print;next}{sub(/=.*/,"="a[2]".1",$1)}1 ' FS=\; OFS=\; infile

This User Gave Thanks to rdcwayx For This Post:
# 16  
Old 02-22-2011
Code:
while IFS='=;' read a b c d e
do [[ "$b" == "$d" ]] && v=$b || b=$v
[[ ! -z $e ]] && d="$d;$e"
echo "$a=$b;$c=$d"
done <infile

Code:
# cat tst
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=PAC:18235173;Name=POPTR_0001s00200.1;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      3'-UTR  13385   13612   .       +       .       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      gene    19769   22804   .       +       .       ID=POPTR_0001s00210;Name=POPTR_0001s00210
scaffold_1      phytozome6      mRNA    19769   22804   .       +       .       ID=PAC:18238552;Name=POPTR_0001s00210.1;PACid=18238552;Parent=POPTR_0001s00210
scaffold_1      phytozome6      5'-UTR  19769   19827   .       +       .       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      CDS     19828   20136   .       +       0       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      CDS     22190   22516   .       +       0       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      3'-UTR  22517   22804   .       +       .       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      gene    74076   75893   .       +       .       ID=POPTR_0001s00220;Name=POPTR_0001s00220
scaffold_1      phytozome6      mRNA    74076   75893   .       +       .       ID=PAC:18237390;Name=POPTR_0001s00220.1;PACid=18237390;Parent=POPTR_0001s00220
scaffold_1      phytozome6      CDS     74076   74235   .       +       0       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      CDS     74359   74634   .       +       2       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      CDS     75259   75893   .       +       2       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      gene    80191   81289   .       -       .       ID=POPTR_0001s00230;Name=POPTR_0001s00230
scaffold_1      phytozome6      mRNA    80191   81289   .       -       .       ID=PAC:18235601;Name=POPTR_0001s00230.1;PACid=18235601;Parent=POPTR_0001s00230
scaffold_1      phytozome6      CDS     81161   81289   .       -       0       Parent=PAC:18235601;PACid=18235601
scaffold_1      phytozome6      CDS     80191   80385   .       -       0       Parent=PAC:18235601;PACid=18235601

Code:
# while IFS='=;' read a b c d e; do [[ "$b" == "$d" ]] && v=$b || b=$v ; [[ ! -z $e ]] && d="$d;$e" ; echo "$a=$b;$c=$d" ; done <tst
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200.1;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      3'-UTR  13385   13612   .       +       .       Parent=POPTR_0001s00200;PACid=18235173
scaffold_1      phytozome6      gene    19769   22804   .       +       .       ID=POPTR_0001s00210;Name=POPTR_0001s00210
scaffold_1      phytozome6      mRNA    19769   22804   .       +       .       ID=POPTR_0001s00210;Name=POPTR_0001s00210.1;PACid=18238552;Parent=POPTR_0001s00210
scaffold_1      phytozome6      5'-UTR  19769   19827   .       +       .       Parent=POPTR_0001s00210;PACid=18238552
scaffold_1      phytozome6      CDS     19828   20136   .       +       0       Parent=POPTR_0001s00210;PACid=18238552
scaffold_1      phytozome6      CDS     22190   22516   .       +       0       Parent=POPTR_0001s00210;PACid=18238552
scaffold_1      phytozome6      3'-UTR  22517   22804   .       +       .       Parent=POPTR_0001s00210;PACid=18238552
scaffold_1      phytozome6      gene    74076   75893   .       +       .       ID=POPTR_0001s00220;Name=POPTR_0001s00220
scaffold_1      phytozome6      mRNA    74076   75893   .       +       .       ID=POPTR_0001s00220;Name=POPTR_0001s00220.1;PACid=18237390;Parent=POPTR_0001s00220
scaffold_1      phytozome6      CDS     74076   74235   .       +       0       Parent=POPTR_0001s00220;PACid=18237390
scaffold_1      phytozome6      CDS     74359   74634   .       +       2       Parent=POPTR_0001s00220;PACid=18237390
scaffold_1      phytozome6      CDS     75259   75893   .       +       2       Parent=POPTR_0001s00220;PACid=18237390
scaffold_1      phytozome6      gene    80191   81289   .       -       .       ID=POPTR_0001s00230;Name=POPTR_0001s00230
scaffold_1      phytozome6      mRNA    80191   81289   .       -       .       ID=POPTR_0001s00230;Name=POPTR_0001s00230.1;PACid=18235601;Parent=POPTR_0001s00230
scaffold_1      phytozome6      CDS     81161   81289   .       -       0       Parent=POPTR_0001s00230;PACid=18235601
scaffold_1      phytozome6      CDS     80191   80385   .       -       0       Parent=POPTR_0001s00230;PACid=18235601
#


Last edited by ctsgnb; 02-22-2011 at 07:14 AM..
This User Gave Thanks to ctsgnb For This Post:
# 17  
Old 02-22-2011
your out put missing with .1 I need to replace POPTR_0001s00200.1,which is name= value with PAC ids.

---------- Post updated at 08:26 AM ---------- Previous update was at 08:22 AM ----------

Hi rdcwayx unfortunately I got special case I want to
Code:
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=PAC:18235173;Name=POPTR_0001s00200.2;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=PAC:18235173;PACid=18235173

so I want to get out put

Code:
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=POPTR_0001s00200.2;Name=POPTR_0001s00200.2;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=POPTR_0001s00200.2;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=POPTR_0001s00200.2;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=POPTR_0001s00200.2;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=POPTR_0001s00200.2;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=POPTR_0001s00200.2;PACid=18235173
scaffold_1      phytozome6      3'-UTR  13385   13612   .       +       .       Parent=POPTR_0001s00200.2;PACid=18235173

Can I get the
Quote:
Name=POPTR_0001s00200.2
value nad replace with
Quote:
ID=PAC:18235173
and
Quote:
Parent=PAC:18235173
this POPTR_0001s00200.2 go up to POPTR_0001s00200.12
# 18  
Old 02-22-2011
Code:
while IFS='=;' read a b c d e; do if [[ "$b" != "$d" ]]; then [[ "$f" ==  1 ]] && v=$d; f=0; b=$v; else f=1; fi; [[ ! -z $e ]] &&  d="$d;$e"; echo "$a=$b;$c=$d"; done <tst

Code:
# cat tst
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=PAC:18235173;Name=POPTR_0001s00200.1;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      3'-UTR  13385   13612   .       +       .       Parent=PAC:18235173;PACid=18235173
scaffold_1      phytozome6      gene    19769   22804   .       +       .       ID=POPTR_0001s00210;Name=POPTR_0001s00210
scaffold_1      phytozome6      mRNA    19769   22804   .       +       .       ID=PAC:18238552;Name=POPTR_0001s00210.1;PACid=18238552;Parent=POPTR_0001s00210
scaffold_1      phytozome6      5'-UTR  19769   19827   .       +       .       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      CDS     19828   20136   .       +       0       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      CDS     22190   22516   .       +       0       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      3'-UTR  22517   22804   .       +       .       Parent=PAC:18238552;PACid=18238552
scaffold_1      phytozome6      gene    74076   75893   .       +       .       ID=POPTR_0001s00220;Name=POPTR_0001s00220
scaffold_1      phytozome6      mRNA    74076   75893   .       +       .       ID=PAC:18237390;Name=POPTR_0001s00220.1;PACid=18237390;Parent=POPTR_0001s00220
scaffold_1      phytozome6      CDS     74076   74235   .       +       0       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      CDS     74359   74634   .       +       2       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      CDS     75259   75893   .       +       2       Parent=PAC:18237390;PACid=18237390
scaffold_1      phytozome6      gene    80191   81289   .       -       .       ID=POPTR_0001s00230;Name=POPTR_0001s00230
scaffold_1      phytozome6      mRNA    80191   81289   .       -       .       ID=PAC:18235601;Name=POPTR_0001s00230.1;PACid=18235601;Parent=POPTR_0001s00230
scaffold_1      phytozome6      CDS     81161   81289   .       -       0       Parent=PAC:18235601;PACid=18235601
scaffold_1      phytozome6      CDS     80191   80385   .       -       0       Parent=PAC:18235601;PACid=18235601
#

Code:
# while IFS='=;' read a b c d e; do if [[ "$b" != "$d" ]]; then [[ "$f" == 1 ]] && v=$d; f=0; b=$v; else f=1; fi; [[ ! -z $e ]] && d="$d;$e"; echo "$a=$b;$c=$d"; done <tst
sscaffold_1     phytozome6      gene    12632   13612   .       +       .       ID=POPTR_0001s00200;Name=POPTR_0001s00200
scaffold_1      phytozome6      mRNA    12632   13612   .       +       .       ID=POPTR_0001s00200.1;Name=POPTR_0001s00200.1;PACid=18235173;Parent=POPTR_0001s00200
scaffold_1      phytozome6      5'-UTR  12632   12638   .       +       .       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      CDS     12639   12650   .       +       0       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      CDS     12768   12891   .       +       0       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      CDS     13117   13226   .       +       2       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      CDS     13310   13384   .       +       0       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      3'-UTR  13385   13612   .       +       .       Parent=POPTR_0001s00200.1;PACid=18235173
scaffold_1      phytozome6      gene    19769   22804   .       +       .       ID=POPTR_0001s00210;Name=POPTR_0001s00210
scaffold_1      phytozome6      mRNA    19769   22804   .       +       .       ID=POPTR_0001s00210.1;Name=POPTR_0001s00210.1;PACid=18238552;Parent=POPTR_0001s00210
scaffold_1      phytozome6      5'-UTR  19769   19827   .       +       .       Parent=POPTR_0001s00210.1;PACid=18238552
scaffold_1      phytozome6      CDS     19828   20136   .       +       0       Parent=POPTR_0001s00210.1;PACid=18238552
scaffold_1      phytozome6      CDS     22190   22516   .       +       0       Parent=POPTR_0001s00210.1;PACid=18238552
scaffold_1      phytozome6      3'-UTR  22517   22804   .       +       .       Parent=POPTR_0001s00210.1;PACid=18238552
scaffold_1      phytozome6      gene    74076   75893   .       +       .       ID=POPTR_0001s00220;Name=POPTR_0001s00220
scaffold_1      phytozome6      mRNA    74076   75893   .       +       .       ID=POPTR_0001s00220.1;Name=POPTR_0001s00220.1;PACid=18237390;Parent=POPTR_0001s00220
scaffold_1      phytozome6      CDS     74076   74235   .       +       0       Parent=POPTR_0001s00220.1;PACid=18237390
scaffold_1      phytozome6      CDS     74359   74634   .       +       2       Parent=POPTR_0001s00220.1;PACid=18237390
scaffold_1      phytozome6      CDS     75259   75893   .       +       2       Parent=POPTR_0001s00220.1;PACid=18237390
scaffold_1      phytozome6      gene    80191   81289   .       -       .       ID=POPTR_0001s00230;Name=POPTR_0001s00230
scaffold_1      phytozome6      mRNA    80191   81289   .       -       .       ID=POPTR_0001s00230.1;Name=POPTR_0001s00230.1;PACid=18235601;Parent=POPTR_0001s00230
scaffold_1      phytozome6      CDS     81161   81289   .       -       0       Parent=POPTR_0001s00230.1;PACid=18235601
scaffold_1      phytozome6      CDS     80191   80385   .       -       0       Parent=POPTR_0001s00230.1;PACid=18235601
#

In a multi-line display (more readable)
Code:
while IFS='=;' read a b c d e
do if [[ "$b" != "$d" ]]
        then [[ "$f" == 1 ]] && v=$d; f=0; b=$v
        else f=1
fi
[[ ! -z $e ]] && d="$d;$e"
echo "$a=$b;$c=$d"
done <tst


Last edited by ctsgnb; 02-22-2011 at 02:22 PM..
This User Gave Thanks to ctsgnb For This Post:
# 19  
Old 02-22-2011
Thank you it works perfectly,your code is faster.I tried with following code earlier
Code:
awk '/mRNA/{split($(NF-2),a,"=");print;next}{sub(/t=.*/,"t="a[2],$1)}1 ' FS=\; OFS=\; input > tmp1
awk '{if(substr($3,1,4)=="mRNA")split ($9, a,";");{sub(a[1],a[2])} print ;}'  tmp1>tmp2
awk '{if(substr($9,1,4)=="Name"){sub(substr($9,1,4),"ID")} print;}' tmp2> output

# 20  
Old 02-22-2011
All in one.

Code:
awk '/mRNA/{split($2,a,"=");print;next}/gene/{print;next}{sub(/=.*/,"="a[2],$1)}1 ' FS=\; OFS=\; infile

This User Gave Thanks to rdcwayx For This Post:
# 21  
Old 02-23-2011
It works perfectly,Thank you.I have one more question.
I have fatsa file something like this
Code:
>POPTR_1446s00200.20|PACid:18205974
KGIAEIKNRLQNRKVLVILDDVDNLKQLHFLAVDWKWFLPGSRIIITSRDKNLLSTHAVDGIYEAEELNDDDALVLLSRK
AFKKDQPIEGYWELCKSVLGHARGLPLAARVLGSSLCGRSMDFWESFIKRLNEIPNRDVMAVLKLSFDGLEELEKKIFLD
IACFFKGMNKDQVSRILNQCGFHANYGIQILQDKSLICVSNDTLSMHDLLQAMGREVVRQESTAEPGRRSRLWANGSLTW
YQSLDDQAGTEEIESIALDWPNPEDVEGTMLKTKRSAWNTGVFSKMSRLRLLRIRNACFDSGPEYLSNELRLILKGCRRL
SEVHSSIGHHNKLIYVNLIDCKSLTSLPSRISGLKLLEELHLSGCSKLKEFPEIVGNKKCLRKLCLDQTSIEELPLSIQY
LVGLISLSLKDCKKLARLPSSINGLKSLKTLHLSGCSELDNLPENLGQLECLNELDVRAVPNDIGYLSSLRHLDLSCNKF
VSLPTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRGPPNLIESFSVIIPGSEIPTWFSHQSEGSSVSVQTPPHSHEN
DEWLGYAVCASLGYPDFPPNVFRSPMQCFFNGDGNESESIYVRLKPCEILSDHLWFLYFPSRFKRFDRHVRFRFEDNCSQ
TKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGALVKRLGHTNDVGEASGSVSSDEQPPTKKLKQI*
>POPTR_1855s00205.1|PACid:18205975
MVMPRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGRINDAYNILEKIALLNQSKLPPGELVPDSTIGLDEESATS
EYTPLLSTTEKMDLDFRSGFQSFLMLFSSKVIRTTLLLWELLFGNVFSYYAIILLTSELSSWQSRCGSNLLKSENPDSLY
INVFISNLAGIACLLSSSLCN*
>POPTR_1855s00200.1|PACid:18205976
MLSHNFCPLVSTGMNMTQTAEIAIRTSNRMMASVIWQLVTRPTATRGHIMPPTFPAAFAAPAPVALTDVGYNCWGFRLPM
RGPVVFYVVMSNRLSSDDPREFFPLASGLTGSVIDVHYYNLFSDEFNSMSVQQNIDFINTNRLVTADYAGDNKWGDDDP
SVFVMTIAGRLQGEFQVTNGYGPKLAPKVMRDHWRTFIVEDDFKFISQNGINAVRIPVGWWIASDPTPPQPYVGGSLKA
>POPTR_0005s16590.4|PACid:18205977
FKINAVNLGGWLVTEGWIKPSLFDGITNKDFLDGTGLQFKSVTVGKYLCAEAGGGNIIVANRTSASGWETFSLWRINETN
FNFRVFNKQFAGLDTNGNGIDIVAVSSTPGRSETFEIVRNSNDTSRVRIKASNGFFLQAKTEELVTADYAGDNKWGDDDP
SVFVMTIAGRLQGEFQVTNGYGPKLAPKVMRDHWRTFIVEDDFKFISQNGINAVRIPVGWWIASDPTPPQPYVGGSLKAL
DNAFLWAQNYGLQVVIDLHAAPGSQNGWEHSSSRDGSQEWGQTDENIRQTVDVIDFLTARYAKSPSLYAVELMNEPRAPG
ASLDSMTKYYKGGYDAVRKHSSTAYVVMSNRLSSDDPREFFPLASGLTGSVIDVHYYNLFSDEFNSMSVQQNIDFINTNR
SGQLNYVTTSNGPLTFVGEWVAEWTVQGATKEDYQRFAEAQLKVFGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKI*

I just want to extract following out put "*.1" results only
Code:
>POPTR_1855s00200.1|PACid:18205976
MLSHNFCPLVSTGMNMTQTAEIAIRTSNRMMASVIWQLVTRPTATRGHIMPPTFPAAFAAPAPVALTDVGYNCWGFRLPM
RGPVVFYVVMSNRLSSDDPREFFPLASGLTGSVIDVHYYNLFSDEFNSMSVQQNIDFINTNRLVTADYAGDNKWGDDDP
SVFVMTIAGRLQGEFQVTNGYGPKLAPKVMRDHWRTFIVEDDFKFISQNGINAVRIPVGWWIASDPTPPQPYVGGSLKA

Can you help me to do that.
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Hi I have a text file (Input.txt) with two column entries separated by tab as given below: aaa str1 bbb str2 cccccc str3 dddd str4 eee str3 ssss str2 sdf str3 hhh str1 fff str2 ccc str3 ..... ..... ..... (1 Reply)
Discussion started by: my_Perl
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3. UNIX for Dummies Questions & Answers

Passing shell script parameter value to awk command in side the script

I have a shell script (.sh) and I want to pass a parameter value to the awk command but I am getting exception, please assist. diff=$1$2.diff id=$2 new=new_$diff echo "My id is $1" echo "I want to sync for user account $id" ##awk command I am using is as below cat $diff |... (1 Reply)
Discussion started by: Sarita Behera
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Unable to pass shell script parameter value to awk command in side the same script

Variable I have in my shell script diff=$1$2.diff id=$2 new=new_$diff echo "My id is $1" echo "I want to sync for user account $id" ##awk command I am using is as below cat $diff | awk -F'~' ''$2 == "$id"' {print $0}' > $new I could see value of $id is not passing to the awk... (0 Replies)
Discussion started by: Ashunayak
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5. Shell Programming and Scripting

Calling shell script within awk script throws error

I am getting the following error while passing parameter to a shell script called within awk script. Any idea what's causing this issue and how to ix it ? Thanks sh: -c: line 0: syntax error near unexpected token `newline' sh: -c: line 0: `./billdatecalc.sh ... (10 Replies)
Discussion started by: Sudhakar333
10 Replies

6. Shell Programming and Scripting

Passing awk variable argument to a script which is being called inside awk

consider the script below sh /opt/hqe/hqapi1-client-5.0.0/bin/hqapi.sh alert list --host=localhost --port=7443 --user=hqadmin --password=hqadmin --secure=true >/tmp/alerts.xml awk -F'' '{for(i=1;i<=NF;i++){ if($i=="Alert id") { if(id!="") if(dt!=""){ cmd="sh someScript.sh... (2 Replies)
Discussion started by: vivek d r
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7. Shell Programming and Scripting

Help: How to convert this bash+awk script in awk script only?

This is the final first release of the dynamic menu generator for pekwm (WM). #!/bin/bash function param_val { awk "/^${1}=/{gsub(/^${1}="'/,""); print; exit}' $2 } echo "Dynamic {" for CF in `ls -c1 /usr/share/applications/*.desktop` do name=$(param_val Name $CF) ... (3 Replies)
Discussion started by: alexscript
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8. Shell Programming and Scripting

Call shell script function from awk script

hi everyone i am trying to do this bash> cat abc.sh deepak() { echo Deepak } deepak bash>./abc.sh Deepak so it is giving me write simply i created a func and it worked now i modified it like this way bash> cat abc.sh (2 Replies)
Discussion started by: aishsimplesweet
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9. Shell Programming and Scripting

want to pass parameters to awk script from shell script

Hello, I have this awk script that I want to execute by passing parameters through a shell script. I'm a little confused. This awk script removes duplicates from an input file. Ok, so I have a .sh file called rem_dups.sh #!/usr/bin/sh... (4 Replies)
Discussion started by: script_op2a
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10. Shell Programming and Scripting

create a shell script that calls another script and and an awk script

Hi guys I have a shell script that executes sql statemets and sends the output to a file.the script takes in parameters executes sql and sends the result to an output file. #!/bin/sh echo " $2 $3 $4 $5 $6 $7 isql -w400 -U$2 -S$5 -P$3 << xxx use $4 go print"**Changes to the table... (0 Replies)
Discussion started by: magikminox
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