I am running into a bit of a problem. I am trying to write a script that will run an interactive (fortran) program repeatedly to dump data across 36 data channels... anyway. I have gotten this far...
Code:
#!/bin/csh
set i=0
while ($i<2)
fitsfilter $1<<EOF
$i
0
9
1
1
g
2
1250
-100
4000
9
9
e
EOF
set i=$i
@ i++
echo $i
end
cp ./$1_plots/data/$1_9hst-p*_2011-01-27*.data $HOME/Users/***/iceanalysis
What I am trying to do is to copy the data files that are being dumped from the run directory into the post processor director, see the cp command. The problem I am having is that this will copy files into the directory that I dont really want. The files have a weird naming convetion, for example:
Code:
i5r05_9hst-p00_2011-01-27_17-46-45.88.data
where p00, goes p00, p01, p02,..., p34, p35 for the individual data channels. So my question is:
1. How can get i to be presented as 00, 01, ...., 34, 35, so I can use that to define the files?
2. How do I extract the system time and date, so I can define the files better?
I am just wondering one thing. I always thought (and vaguely remembering using it that way) that you can cp a file into another directory with a different name, but when I try to say something like:
it basically tells me that I cant because *.dmp is not a folder. Am I fogetting something in my command?
---------- Post updated at 08:55 PM ---------- Previous update was at 09:44 AM ----------
I am sorry for the double post, but I am officially at a loss. I trying to copy my output files into another directory and then rename them, so I can feed them into my pyhton progam.
Anyway my code is as follows at the moment:
Code:
#!/bin/tcsh
set i=0
set fitsdir=$HOME/Runs/$1/filter
set D=`date +%Y-%m-%d`
set t=`date +%H-%M`
while ($i<12)
cd $fitsdir
fitsfilter $1$2<<EOF
$i
0
9
1
1
g
2
1250
-100
4000
9
9
e
EOF
set i=$i
@ i++
end
set j=0
while ($j<12)
cd $fitsdir/$1$2_plots/data
if ($j<10) then
set p=p0$j
cp -- $1$2_9hst-${p}_${D}_${t}*.data ~/Users/riedel/iceanalysis/$1$2hst0$j.dmp
else
set p=p$j
cp -- $1$2_9hst-${p}_${D}_${t}*.data ~/Users/riedel/iceanalysis/$1$2hst$j.dmp
endif
set j=$j
@ j++
end
The C shell keeps throwing errors at me about cp and mv needing a directory as a target. I am getting more and more confused about this because I can do the command in the command line without any problem, but as soon as I try the same thing in the script it wont work at all
Any input is welcome...
Last edited by madtowneast; 01-30-2011 at 03:35 PM..
When you have more than 2 files on the cp/mv command line the assumption is that you want to copy/move multiple files into a directory eg:
Code:
cp file1 file2 file3 directory
In your case $1$2_9hst-${p}_${D}_${t}*.data is probably expanding to more than 1 file. You should also be carefull of the case were a file is not there, as something like i5r05_9hst-p07_2011-01-27_17*.data will be passed to cp as the filename and you'll get errors like:
Code:
cp: cannot stat `i5r05_9hst-p07_2011-01-27_17*.data': No such file or directory
I actually tried to avoid that problem with the loop, i.e. by passing just
Code:
i5r05_9hst-p07_2011-01-27_17*.data
every time instead of a whole set. I have modified the code a little more to just rename the files after they have been copied into a specific folder, but the mv command keeps demanding a directory as the destination instead of just being able to rename the file. I tested renaming in the command line and it works fine, so I am at a loss really. I made new script just to rename the files with the same error that the destination has to be a directory.
Code:
#!/bin/tcsh
set D=`date +%Y-%m-%d`
cd $HOME/Users/riedel/iceanalysis
set i=0
while ($i<10)
if ($i<10) then
set p=p0$i
set f1=$1$2_9hst-${p}_${D}*.data
set f2=$1$2hst${p}.dmp
mv -t $f2 $f1
else
set p=p$i
mv $1$2_9hst-${p}_${D}*.data $1$2hst${p}.dmp
endif
set i=$i
@ i++
end
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01-27-2011
