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Reverse script usage -Awk

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# 1  
Old 01-24-2011
Reverse script usage -Awk
Is it possible to convert EXONtoBED (Output to input)?

1. BEDtoExon.sh
-------------------
Code:
awk '{
  n11 = split($11, t11, ",")
  n12 = split($12, t12, ",")
  for (i = 0; ++i < n11;) {
	s12 = $2 + t12[i]
    print $1, s12, s12 + t11[i], i”E_”$4
	}
  }' $1

----------------------------------------------------------------------------------------------------------------------------
$ sh BedtoExon.sh input >>ExonDB

input (BED Format)
Code:
chr1	87942437    	87952030    	NM_001144992	0   	+   	87942537	87949664    	0   	3   	710,114,2506,   0,2725,7087,
chr1	89967353    	90116577    	NM_201644   	0   	+   	89967404	90114999    	0   	5   	900,132,88,220,1876,	0,144265,145016,145359,147348,

output (EXON Format)
Code:
chr1 	87942437 	87943147 	1E_NM_001144992
chr1 	87945162 	87945276 	2E_NM_001144992
chr1 	87949524 	87952030 	3E_NM_001144992
chr1 	89967353 	89968253 	1E_NM_201644
chr1 	90111618	 90111750 	2E_NM_201644
chr1 	90112369 	90112457 	3E_NM_201644
chr1	 90112712 	90112932 	4E_NM_201644
chr1 	90114701 	90116577 	5E_NM_201644

# 2  
Old 01-24-2011
it's hard, because only from the output, we can't guess the data from $3 ~ $10 (except $4) in input file.
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