10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am running the below loop that to process the 3 bam files (which isn't always the case). A .py executable is then called using | xargs sh to further process. If I just run it with echo the output is fine and expected, however when
| xargs sh is added I get the error. I tried adding | xargs... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
Hi all,
I have a script issue I can't seem to work out.
In a directory I have several folders and I want to send just the sapdata1 to sapdata14 folders and their contents but not sapdataXX/.snapshot
the script is:
#!/bin/bash
# SETUP OPTIONS
export SRCDIR="/scratch/doug/test/sapdata*"... (5 Replies)
Discussion started by: DougyC
5 Replies
3. Shell Programming and Scripting
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
#!/bin/bash -l
#SBATCH -p node
#SBATCH -A <projectID>
#SBATCH -n 16
#SBATCH -t 7-00:00:00
#SBATCH --mem=128GB
#SBATCH --mail-type=ALL... (1 Reply)
Discussion started by: @man
1 Replies
4. Shell Programming and Scripting
Hello,
i have an dynamical apache_cache that I need to clean all days (older tant one day) with an unix command :
find /usr/IBM/HTTPServer/apache_cache/ -name '*' -mtime +1 -print0|xargs -0 rm -r --
but it didn't work.
Could you explain me why.
So I will put below all my script :... (13 Replies)
Discussion started by: steiner
13 Replies
5. Shell Programming and Scripting
Hello Experts,
I need to copy files from one location to another using xargs.
Tried something like this (In Ubuntu & Solaris ).
mkdir -p 1234;
find /home/emd/Desktop/n007/M007/ -type f -name "A2014*" | xargs -0 cp -r {} /home/emd/Desktop/1234
But every time i run this, a weird error... (6 Replies)
Discussion started by: Saidul
6 Replies
6. Shell Programming and Scripting
Hi, I'd like to ask if anybody can help improve my code to move 1 million+ files from a directory to another:
find /source/dir -name file* -type f | xargs -I '{}' mv {} /destination/dir
I learned this line of code from this forum as well and it works fine. However, file movement is kinda... (6 Replies)
Discussion started by: agentgrecko
6 Replies
7. Shell Programming and Scripting
I want to move all files from one directory to another directory excluding today (sysdate files) on daily basis.
file name is in pattern file_2013031801, file_2013031802 etc (2 Replies)
Discussion started by: khattak
2 Replies
8. Shell Programming and Scripting
I need to apply mp3gain (album mode) to all mp3 files in a given directory. Each album is in its own directory under /media/data/music/albums for example:
/media/data/music/albums/foo
/media/data/music/albums/bar
/media/data/music/albums/more
What needs to happen is:
cd... (4 Replies)
Discussion started by: audiophile
4 Replies
9. Shell Programming and Scripting
I believe what is happening is rm is executing in the script on every directory and on failure of the first it stops although returns status 0.
find $HOME -name /directory/filename | xargs -l rm
This is the code I use but file remains. I am using sun solaris system which has way limited... (4 Replies)
Discussion started by: Ebodee
4 Replies
10. Shell Programming and Scripting
Hi
I need to move multiple (say 10 files) from one location to another location. My selection would be like this...
ls -ltr *.arc | head ---> Need to move top 10 files with single command without iterating in loop. I know we can move files like this with find command but not sure if I can... (4 Replies)
Discussion started by: malaymaru
4 Replies