9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Shell script logic
Hi
I have 2 input files like with file 1 content as (file1)
"BRGTEST-242" a.txt "BRGTEST-240" a.txt "BRGTEST-219" e.txt
File 2 contents as fle(2)
"BRGTEST-244" a.txt "BRGTEST-244" b.txt "BRGTEST-231" c.txt "BRGTEST-231" d.txt "BRGTEST-221" e.txt
I want to get... (22 Replies)
Discussion started by: pottic
22 Replies
2. Shell Programming and Scripting
I am trying to write a shell script which takes an input file as an arguement in the terminal e.g. bash shellscriptname.sh input.txt. I would like for the file to be read line by line each time checking if the .txt file contains certain words or letters(validating the syntax). If the line being... (1 Reply)
Discussion started by: Gurdza32
1 Replies
3. Shell Programming and Scripting
Hi,
I need to compare 2 text files with around 60000 rows and 1 column. I need to compare these and write the mismatch data to 3rd file.
File1 - file2 = file3
wc -l file1.txt
58112
wc -l file2.txt
55260
head -5 file1.txt
101214200123
101214700300
101250030067
101214100500... (10 Replies)
Discussion started by: Divya Nochiyil
10 Replies
4. Shell Programming and Scripting
Hi Friends,
I'm a great fan of this forum... it has helped me tone my skills in shell scripting. I have a challenge here, which I'm sure you guys would help me in achieving...
File A has a list of job ids and I need to compare this with the File B (*.log) and File C (extend *.log) and copy... (6 Replies)
Discussion started by: asnandhakumar
6 Replies
5. Shell Programming and Scripting
Hi gurus
I have two csv files that are outputs. The file contains data similar to
s.no,number1,number2,date1
--------------------------------
1, a123,482.29,11/28/07 13:00
2,a124,602.7,9/24/07 14:00
3,a125,266.93,10/9/07 16.48
4,a126,785.15,11/14/07 16:08
<file 2>
s.no name... (2 Replies)
Discussion started by: inkyponky
2 Replies
6. What is on Your Mind?
lets list the most deadly commands on Unix/Linux and what they do....
> sudo rm -rf / (27 Replies)
Discussion started by: Rahulpict
27 Replies
7. Shell Programming and Scripting
Hi
How can i compare a string using if statement in a script?
For eg:
I have
filename="abc.sh"
if ;then
{
.......
.......
}
fi
but this doesnot work .. How will i execute this ??
Thanks in advance (1 Reply)
Discussion started by: jisha
1 Replies
8. Shell Programming and Scripting
HI,
I have a folder with some 120 files...i just want to print all the file filenames(not the content or anything else) onto a file say .txt.
please help me with this command
Thanks a lot. (15 Replies)
Discussion started by: kumarsaravana_s
15 Replies
9. Shell Programming and Scripting
hi all,
very need help urgently :(
i have a problem compare 2 files from solaris, the 2 files its shown below:
data1.log :
6512345678 6512345677 20070131 073824 420
6511111111 6522222222 20070131 103747 87
6522222222 6233333333 ... (2 Replies)
Discussion started by: bucci
2 Replies
VCF-COMPARE(1) User Commands VCF-COMPARE(1)
NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS
-c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)