Get common lines from multiple files


 
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# 8  
Old 07-16-2010
Quote:
Originally Posted by genehunter
[...]
I would like to know if this script is extensible for say a hundred such files?
Also if the files are names differently; not file[a-d], how will the code change.
Could you also give a brief explanation if time permits.
Yes,
in this case the number of arguments (input files) is limited only by your system (MAX_ARGS kernel limit).

As far as the script is concerned, the filenames are irrelevant,
just pass the input files as arguments:

Code:
awk 'END {
  for (R in rec) {
    n = split(rec[R], t, "/")
    if (n > 1) 
      dup[n] = dup[n] ? dup[n] RS sprintf("\t%-20s -->\t%s", rec[R], R) : \
        sprintf("\t%-20s -->\t%s", rec[R], R)
    }
  for (D in dup) {
    printf "records found in %d files:\n\n", D
    printf "%s\n\n", dup[D]
    }  
  }
{  
  rec[$0] = rec[$0] ? rec[$0] "/" FILENAME : FILENAME
  }' <any_filename_1> <any_filename_2> ... <any_filename_n>

I'll post the explanation later.
These 2 Users Gave Thanks to radoulov For This Post:
# 9  
Old 09-01-2010
This does not work correctly.
The file results show

fileA/fileA/fileA/fileA/fileA --> chr1
in my actual data.
The sample worked.. and I know there are no duplicate lines because atleast one filed in the everyline is different from others.
Please help
~GH
# 10  
Old 09-02-2010
... so you should post samples of your real data files.

I've been asked to provide an explanation of the awk code:
Code:
awk 'END {
  # the END block is executed after
  # all the input has been read
  # loop over the rec array
  # and build the dup array indxed by the nuber of
  # filenames containing a given record
  for (R in rec) {
    n = split(rec[R], t, "/")
    if (n > 1) 
      dup[n] = dup[n] ? dup[n] RS sprintf("\t%-20s -->\t%s", rec[R], R) : \
        sprintf("\t%-20s -->\t%s", rec[R], R)
    }
  # loop over the dup array
  # and report the number and the names of the files 
  # containing the record   
  for (D in dup) {
    printf "records found in %d files:\n\n", D
    printf "%s\n\n", dup[D]
    }  
  }
{  
  # build an array named rec (short for record), indexed by 
  # the content of the current record ($0), concatenating 
  # the filenames separated by / as values
  rec[$0] = rec[$0] ? rec[$0] "/" FILENAME : FILENAME
  }' file[a-d]


Last edited by radoulov; 10-21-2014 at 05:24 AM..
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