qsub in a bash script?


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qsub in a bash script?

I was just wondering if it is permissible to qsub from a bash script as follows:

Code:
#! /bin/sh

echo "altering .txt in dir $DIR with retokenize.py"
for f in $DIR/txt/*.txt; do
  echo $f;
  /l2/nlp/i2b2/retokenize.py < $f > ${f//.txt/.tok};
done


echo "altering .tok in dir $DIR with awk <s> </s>"
for f in $DIR/txt/*.tok; do
  echo $f;
  cat $f | awk '{printf("<s> %s </s>\n",$0)}' > ${f//.tok/.ecIN};
done


echo "altering .tok in dir $DIR with tagger.stayTOK.py "
for f in $DIR/txt/*.tok; do
  echo $f;
  cat $f | /l2/nlp/i2b2/tagger.stayTOK.py < $f > ${f//.tok/.ecIN-POS};
done


export MODEL=/data/nlp/src/charniak/DATA/DATA_DEV24/;
echo "qsubbing for $DIR";
qsub -o $DIR/ecOUT.log -q kiwi.q /l2/nlp/i2b2/runEC.unconstrained.sh;
qsub -o $DIR/ecOUT-POS.log -q kiwi.q l2/nlp/i2b2/runEC.POS.sh;

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ATF-SH(1)						    BSD General Commands Manual 						 ATF-SH(1)

NAME
atf-sh [-s shell] -- interpreter for shell-based test programs SYNOPSIS
atf-sh script DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library. atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter- preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not use any non-standard extensions. The following options are available: -s shell Specifies the shell to use instead of the value provided by ATF_SHELL. ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes. ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes. ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a specific interpreter. EXAMPLES
Scripts using atf-sh(3) should start with: #! /usr/bin/env atf-sh Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode the path to atf-sh in the script and then use the -s option afterwards as a single parameter: #! /path/to/bin/atf-sh -s/bin/bash ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts. SEE ALSO
atf-sh(3) BSD
September 27, 2014 BSD

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