10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello,
I'm working on a SGE cluster and trying to echo the variables passed to the qsub command.
My script is as follows
#!/bin/bash
#$ -V
#$ -cwd
#$ -pe make 10
if ; then
echo "Variable is not set"
else
echo "Variable says: $StatedUserName"
fi
and I run the... (1 Reply)
Discussion started by: nans
1 Replies
2. Shell Programming and Scripting
I'm new to utilities like socat and netcat and I'm not clear if they will do what I need.
I have a "compileDeployStartWebServer.sh" script and a "StartBrowser.sh" script that are started by emacs/elisp at the same time in two different processes.
I'm using Cygwin bash on Windows 10.
My... (3 Replies)
Discussion started by: siegfried
3 Replies
3. Shell Programming and Scripting
Linux Server
Hi!
just some help...
I'm using a "Sun Grid Engine" with "qsub"
In one hand I have this code
while read -r H; do echo ${H}; done < list
The number of the lines in the list file is 100.
On the other hand I want to create a job array with the option -t
echo... (3 Replies)
Discussion started by: echo manolis
3 Replies
4. UNIX for Advanced & Expert Users
Hi all,
Today, I want to ask how to submit multiple qsub jobs.
I want to submit 100 .sh files for the simulations.
The name of files is
run_001.sh,
run_002.sh,
run_003.sh,
.....
.....
run_100.sh
Submitting each file manually are time-consuming, hence, I want to make another .sh file... (11 Replies)
Discussion started by: syg3434
11 Replies
5. UNIX for Dummies Questions & Answers
"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \""
Can anybody please tell me the qsub equivalent for this command?
---------- Post updated at 06:48 AM... (0 Replies)
Discussion started by: chaudhary3031
0 Replies
6. UNIX for Advanced & Expert Users
Hello. Hopefully this is the right forum, did a search and found some similar questions here.
I'm trying to find out if there is a way to get the job id while submitting a job using qsub. I want to monitor the list of active jobs using qstat and when my jobid is no longer on the active list, I... (3 Replies)
Discussion started by: aeoleon88
3 Replies
7. UNIX for Dummies Questions & Answers
Hello,
I have some issue with qsub and the standard output : I launch a script that "echoes" the string "abc" and then executes a C program in which I print informations with the printf function ; the .o file contains "abc" but not the information displayed by printf. I also tried... (0 Replies)
Discussion started by: Shaderw
0 Replies
8. Shell Programming and Scripting
Hey all,
I have a binary file, named "exe1" that receives a parameter. (I don't have its source code).
Executing "exe1" results in creating 3 output files.
I have a bash script that runs "exe1".
I want to enter "exe1" to cluster queue (using subq command)
But i want to do it more than... (1 Reply)
Discussion started by: elad2109
1 Replies
9. UNIX for Advanced & Expert Users
Hello,
I have a perl script that takes in one file of input and outputs to a file. I would like to run this script on several input files, and I would like to run it with qsub, something like this:
Input files:
FileListDssp.txt.numaa
FileListDssp.txt.numab
FileListDssp.txt.numac
etc..
... (1 Reply)
Discussion started by: InfoSeeker
1 Replies
10. UNIX for Dummies Questions & Answers
I am trying to run a Matlab function, file.m, with qsub. Here is a portion of my .sge file:
echo Starting to run Matlab
matlab -nojvm -nodesktop -r "file('${inputfile}');exit;"
echo finished running Matlab
The last two lines of the Matlab function are:
disp('finished');
exit
So my... (1 Reply)
Discussion started by: laether
1 Replies
RBASH(1) General Commands Manual RBASH(1)
NAME
rbash - restricted bash, see bash(1)
RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is
used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow-
ing are disallowed or not performed:
o changing directories with cd
o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV
o specifying command names containing /
o specifying a filename containing a / as an argument to the . builtin command
o specifying a filename containing a slash as an argument to the -p option to the hash builtin command
o importing function definitions from the shell environment at startup
o parsing the value of SHELLOPTS from the shell environment at startup
o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators
o using the exec builtin command to replace the shell with another command
o adding or deleting builtin commands with the -f and -d options to the enable builtin command
o using the enable builtin command to enable disabled shell builtins
o specifying the -p option to the command builtin command
o turning off restricted mode with set +r or set +o restricted.
These restrictions are enforced after any startup files are read.
When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script.
SEE ALSO
bash(1)
GNU Bash-4.0 2004 Apr 20 RBASH(1)