copying columns with headers' specific pattern

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Copying specific file types to specific folders

I am trying to write a script that cycles through a folder containing many folders and when inside each one it's supposed to copy all the .fna.gz files to a folder elsewhere if the file and the respective folder have the same name. for fldr in /home/playground/genomes/* ; do find ....

2. Shell Programming and Scripting

Copying files with a specific pattern

Hi All I am trying to copy files from one location to another and given below are some sample ones: aaa_bbb_ccc_ddd_cost_code_20140330.gz aaa_bbb_ccc_ddd_revenue_zone_20140329.gz aaa_bbb_ccc_ddd_benefit_extract_20140330.csv.gz aaa_bbb_ccc_ddd_profit_zone_20150509.csv.gz...

3. Shell Programming and Scripting

CSv2dat file headers and columns order

Dear all, I have a csv file which is transformed to .dat. I have an awk file which is supposing to do the mapping of the dat file. the code from the awk file is the one below. The content of the dat file is looking like this (tab separated): ODT AGE CDT CO SEX TIME ...

4. UNIX for Dummies Questions & Answers

Printing lines with specific strings at specific columns

Hi I have a file which is tab-delimited. Now, I'd like to print the lines which have "chr6" string in both first and second columns. Could anybody help?

5. Shell Programming and Scripting

Can't figure out how to find specific characters in specific columns

I am trying to find a specific set of characters in a long file. I only want to find the characters in column 265 for 4 bytes. Is there a search for that? I tried cut but couldn't get it to work. Ex. I want to find '9999' in column 265 for 4 bytes. If it is in there, I want it to print...

6. Shell Programming and Scripting

Transpose multipe columns to rows and adding headers

Hi, I found the following awk script to transpose multiple (3) columns to multiple rows: #=== BEGIN {FS=","} { for (i=1;i<=NF;i++) { arr=$i; if(nf<= NF) nf=NF; } nr=NR } END { for(i=1;i<=nf;i++) {

7. Shell Programming and Scripting

Merging of files with different headers to make combined headers file

Hi , I have a typical situation. I have 4 files and with different headers (number of headers is varible ). I need to make such a merged file which will have headers combined from all files (comman coluns should appear once only). For example - File 1 H1|H2|H3|H4 11|12|13|14 21|22|23|23...

8. Shell Programming and Scripting

merge columns into one line after a specific pattern

Hi all, im a linux newbie, plz help! I have a file - box -------- Fox-2 -------- UF29 zip42 -------- zf-CW SNF2_N Heli_Z -------- Fox -------- Kel_1 box

9. UNIX for Dummies Questions & Answers

copying a pattern of files in one directory into other with new pattern names...

Hi, I have to copy a set of files abc* in /path/ to /path1/ as abc*_bkp. The list of files appear as follows in /path/: abc1 xyszd abc2 re2345 abcx .. . abcxyz I have to copy them (abc* files only) into /path1/ as: abc1_bkp abc2_bkp abcx_bkp .. .

10. Shell Programming and Scripting

Copying specific files from remote m/c to specific folders

Hi All, I am trying to rsync some of the latest files from remote m/c to my local linux box. Folder structure in my remote m/c looks like this /pub/Nightly/Package/ROLL/WIN /pub/Nightly/Package/SOLL/sol /pub/Nightly/Package/SOLL/linux Each of the folder contains gzip files which on daily...

LEARN ABOUT DEBIAN

bzegrep

BZGREP(1)						      General Commands Manual							 BZGREP(1)

NAME

       bzgrep, bzfgrep, bzegrep - search possibly bzip2 compressed files for a regular expression

SYNOPSIS

       bzgrep [ grep_options ] [ -e ] pattern filename...
       bzegrep [ egrep_options ] [ -e ] pattern filename...
       bzfgrep [ fgrep_options ] [ -e ] pattern filename...

DESCRIPTION

       Bzgrep  is  used to invoke the grep on bzip2-compressed files. All options specified are passed directly to grep.  If no file is specified,
       then the standard input is decompressed if necessary and fed to grep.  Otherwise the given files are uncompressed if necessary and  fed	to
       grep.

       If  bzgrep  is  invoked as bzegrep or bzfgrep then egrep or fgrep is used instead of grep.  If the GREP environment variable is set, bzgrep
       uses it as the grep program to be invoked. For example:

	   for sh:  GREP=fgrep	bzgrep string files
	   for csh: (setenv GREP fgrep; bzgrep string files)

AUTHOR

       Charles Levert (charles@comm.polymtl.ca). Adapted to bzip2 by Philippe Troin <phil@fifi.org> for Debian GNU/Linux.

SEE ALSO

       grep(1), egrep(1), fgrep(1), bzdiff(1), bzmore(1), bzless(1), bzip2(1)

																	 BZGREP(1)

Shell Programming and Scripting