10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
The bash below executes and does find all the .bam files in each R_2019 folder. However set -x shows that the .bam extension only gets removed from one .bam file in each folder (appears to be the last in each). Why is it not removing the extension from each (this is $SAMPLE)? Thank you :).
set... (4 Replies)
Discussion started by: cmccabe
4 Replies
2. Shell Programming and Scripting
In the bash below I am trying to create sub-directories inside a directory from files with specific .bam extensions. There may be more then one $RDIR ing the directory and the .bam file(s) are trimmed (removing the extension and IonCode_0000_) and the result is the folder name that is saved in... (2 Replies)
Discussion started by: cmccabe
2 Replies
3. Shell Programming and Scripting
Hello All,
Since i'm relatively new in shell script need your guidance.
I'm copying files manually based on a specific word in a file name and its extension and then moving it into some destination folder.
so if filename contains hyr word and it has .md and .db extension; it will move to TUM/HYR... (13 Replies)
Discussion started by: prajaktaraut
13 Replies
4. Shell Programming and Scripting
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
Discussion started by: cmccabe
1 Replies
5. UNIX for Dummies Questions & Answers
Hi All,
I want to fetch the files based on .done file and display the .csv files and Wil take .csv files for processing.
1.I need to display the .done files from the directory.
2.next i need to search for the .Csv files based on .done file.then move .csv files for the one directory
... (2 Replies)
Discussion started by: girija.g6
2 Replies
6. Shell Programming and Scripting
Hi
I Have a directory and i have some files below
abc.txt
abc.gif
gtee.txt
ghod.pid
umni.log
unmi.tar
How can use glob function to grep abc files , i have created a variable "text" and i assigned value as "abc", please suggest me how can we use glob.glob( ) to get the output as below... (2 Replies)
Discussion started by: kumar85shiv
2 Replies
7. Shell Programming and Scripting
I'm sure this has been asked many times, but a search didn't turn up a definitive best method for this (if there ever is such a thing).
I have been using rsync to back up my main data directory, but I have accumulated a large number of older backups that I don't need. All of the files I don't... (14 Replies)
Discussion started by: LMHmedchem
14 Replies
8. Shell Programming and Scripting
hello,
i have the below while loop wherein i am passig list of filenames to be scped. this is in unix ksh -
filenamelist.txt has list of files names, including .dat and .txt files
but i want to pass only the .txt filenames to the while loop so that only .txt files gets scped.
how can... (4 Replies)
Discussion started by: billpeter3010
4 Replies
9. UNIX for Dummies Questions & Answers
Hi,
I know that to list files with no extension, we can use..
ls -1 | grep -v "\."
And to list .prog files, we can use..
ls -1 *.prog
or
ls -1 | grep '.prog$' (4 Replies)
Discussion started by: adshocker
4 Replies
10. Shell Programming and Scripting
Hi, I need some help to see if I this is posible with a while loop. I need to run a script once a day that will take all of the *.TXT files in a folder and rename them to a specific file name structure with a .dat extension. I wrote this script, but I get an error that says " line 3: too many... (2 Replies)
Discussion started by: strpwr
2 Replies