10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hello, I am trying to find a solution to problem that's proving to be beyond my newbie skills. The below files comes from a genetics study. File 1 describes a position on the genome and file 2 does the same but is formatted differently and has more information. I am trying to match all lines in... (5 Replies)
Discussion started by: andmal
5 Replies
2. UNIX for Beginners Questions & Answers
Hi there,
I would like to use awk to reformat a tab-delimited file containing three columns as follows:
Data file:
sample 1 173
sample 269 530
sample 687 733
sample 1699 1779
Desired output file:
sample 174..265, 531..686, 734..1698
I need the value... (5 Replies)
Discussion started by: emiley
5 Replies
3. UNIX for Dummies Questions & Answers
I have a file like this.
It is tab delimited.
Unfortunately, the missing data was filled in with a period "." (see the leading lines 1-5 columns)
I want to substitute the periods for misisng data with an integer "-999".
however, I do not want the global replace to change the other periods seen... (7 Replies)
Discussion started by: genehunter
7 Replies
4. Programming
I'm pretty new to Java and I am trying to write a program that will pick up a file from a windows directory adn parse through the XML file to produce a report that will show a total item count and a total paid amount. Any one have any suggestions? Trying to figure out where to start... (4 Replies)
Discussion started by: risarose87
4 Replies
5. Shell Programming and Scripting
I am fairly new to programming and trying to resolve this problem. I have the file like this.
CHROM POS REF ALT 10_sample.bam 11_sample.bam 12_sample.bam 13_sample.bam 14_sample.bam 15_sample.bam 16_sample.bam
tg93 77 T C T T T T T
tg93 79 ... (4 Replies)
Discussion started by: empyrean
4 Replies
6. Shell Programming and Scripting
Hi,
I have two files:
first input file is having 7-8 columns,
and second data file is like
I want to arrange my datafile1 in the order given in second data file, by comparing the seconddatafile with the second column of first file and print the entire line....also if any... (2 Replies)
Discussion started by: CAch
2 Replies
7. UNIX for Advanced & Expert Users
I'm facing a strange problem, please help me out.
Here we go.
I want to count number of fields in particular file.
filename and delimiter character will be passed through parameter.
On command prompt if i type following i get 27 as output (which is correct)
cat customer.dat | head -1 | awk... (12 Replies)
Discussion started by: vikanna
12 Replies
8. Shell Programming and Scripting
I have this text file with a very large number of columns (10,000+) and I want to move the first column to the position of the six column so that the text file looks like this:
Before cutting and pasting
ID Family Mother Father Trait Phenotype
aaa bbb ... (5 Replies)
Discussion started by: evelibertine
5 Replies
9. Shell Programming and Scripting
Hello,
I am trying to parse a file that resembles the last three groupings into something looking like the first two lines. I've fiddled with sed and awk a bit, but can't get anything to work properly. I need them separated by some delimiter. The file is some 23,000 lines of the stuff....
... (9 Replies)
Discussion started by: dkozel
9 Replies
10. Shell Programming and Scripting
Hi guys, my supervisor has asked me to solve the problem in 7 days, I've taken 3 days to think about it but couldn't figure out any idea.
Please give me some thoughts with the following problem,
I have index.database that has only index date:
1994
1995
1996
1997
1998
1999
I have... (6 Replies)
Discussion started by: onthetopo
6 Replies