Executing mpirun commands


 
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Old 02-11-2004
Executing mpirun commands

Basically, I would like to run an mpirun query on my web server to query your databases via yours when using the BLAST program, however the server seems not able to execute even basic mpirun programs such as cpi (to calculate pi). Are there any settings I should take note of?

I am running Perl CGI scripts via the Apache v1.3.28 server in a Unix environment, is there settings that should be taken care of when running command line in this particular case for mpirun (the script alias has already been set up - ScriptAliasMatch .../cgi-bin/... /usr/users/$1/public_html/cgi-bin/$2) :

The line in Perl script is :
`/usr/local/apps/mpich/bin/mpirun -machinefile /usr/users/utess/machines.ALPHA -np 2 /usr/local/apps/mpich/examples/cpi -o /usr/local/d.txt 2> /usr/local/err.txt`;

The relevant error is :
/usr/local/apps/mpich/bin/mpirun: pwd: read error in ..
/usr/local/apps/mpich/bin/mpirun: test: argument expected

Is there anything that should be taken care of when running scripts of this nature? Even when "nobody" user account has been set to a writable directory such that I could execute the command in "nobody"'s account I still could not execute the command via Perl script.

Is it a problem with the server configuration since "nobody"'s account can execute the command?

I really would appreciate any help.
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OMPI-IOF(1)							     Open MPI							       OMPI-IOF(1)

NAME
ompi-iof, orte-iof - Displays a copy of the output streams from a process. NOTE: ompi-iof, and orte-iof are exact synonyms for each other. Using any of the names will result in exactly identical behavior. SYNOPSIS
ompi-iof [ options ] Options ompi-iof will display a copy of the indicated stdout, stderr, and/or stddiag streams from the designated process. -pid | --pid The pid of the mpirun executing the process whose streams are to be copied -stdout | --stdout Display a copy of the specified process' stdout. If no options are specified, this will act as the default -stderr | --stderr Display a copy of the specified process' stderr. -stddiag | --stddiag Display a copy of the specified process' stddiag. -rank | --rank The rank of the process whose output is to be copied. DESCRIPTION
ompi-iof displays a copy of the indicated stdout, stderr, and/or stddiag streams from the designated process. At this time, a ctrl-C must be used to terminate the program. The program will terminate cleanly, telling the associated mpirun to close the requested streams before exiting. SEE ALSO
orterun(1) 1.4.5 Feb 10, 2012 OMPI-IOF(1)