10 More Discussions You Might Find Interesting
1. UNIX for Beginners Questions & Answers
Hi,
I need help to match patterns from between two different files and extract region of strings.
inputfile1.fa
>l-WR24-1:1
GCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGG
GGCGGAGGGCGACGGCGGGTGGTGAGCGGCCCGGGAGGGGCCGGGCGGTGGGGTCACGTG... (4 Replies)
Discussion started by: bunny_merah19
4 Replies
2. UNIX for Beginners Questions & Answers
Hi,
i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file
I have tried with join and awk and i keep getting blank outputs or same file
is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
3. UNIX for Dummies Questions & Answers
Hi Help,
I have two files namely a.txt and b.txt
a.txt looks like
a.txt
1 2 2
1 3 3
2 4 4
4 5 6
6 7 7
b.txt looks like,
b.txt
1 2 1
1 3 2
2 4 3
3 4 4
4 5 5 (2 Replies)
Discussion started by: Indra2011
2 Replies
4. Shell Programming and Scripting
Hi all, I'm pretty much a newbie to UNIX. I would appreciate any help with UNIX coding on comparing two large csv files (greater than 10 GB in size), and output a file with matching columns.
I want to compare file1 and file2 by 'id' and 'chain' columns, then extract exact matching rows'... (5 Replies)
Discussion started by: bkane3
5 Replies
5. Shell Programming and Scripting
Hi,
i am trying to match strings from 2 different files based on position like below:-
file1 (tab delimited)
f07270 lololol fff
u12730 gggddd dddkkrr mmm
file2 (not tab delimited)
%f07270 APSLH bl%alalalalallaadsdsfdfdfdgsgfss
%g13450 GDIDFLRIP%ILITEAPPRKgsfgsgsf
%d08880... (11 Replies)
Discussion started by: redse171
11 Replies
6. Shell Programming and Scripting
I have two files I want to match ids in the 5th column of the file 1 with the first column of the file 2 and get the description for the matched ids as shown in the output
sno nm no nm2 ID
1 cc 574372 yyyi |6810|51234|
2 bb 119721 nmjk |6810|51234|51179| ... (4 Replies)
Discussion started by: raj_k
4 Replies
7. Shell Programming and Scripting
Hey fellas!
Here come my problem. I appreciate if you have a look at it.
I have several files with following structure:
file_1:1 21
4 45
file_2:2 31
4 153
6 341
and so on...
and I have a 'reference' file look like this:
File_ref:A 1
B 2
C 3 (5 Replies)
Discussion started by: @man
5 Replies
8. Shell Programming and Scripting
Hi Friends,
I'm a great fan of this forum... it has helped me tone my skills in shell scripting. I have a challenge here, which I'm sure you guys would help me in achieving...
File A has a list of job ids and I need to compare this with the File B (*.log) and File C (extend *.log) and copy... (6 Replies)
Discussion started by: asnandhakumar
6 Replies
9. Shell Programming and Scripting
Have two files and want to compare the content of file1 with file2. When matched remove the line.
awk 'NR==FNR {b; next} !(b in $0)' file1 file2file1
1. if match
2. removefile2
1. this line has to be removed if match
2. this line has a match, remove
3. this line has no match, no removingThe... (3 Replies)
Discussion started by: sdf
3 Replies
10. Shell Programming and Scripting
Hiiiii friends
I have 2 files which contains huge data & few lines of it are as shown below
File1: b.dat(which has 21 columns)
SSR 1976 8 12 13 10 44.00 39.0700 70.7800 7.0 0 0.00 0 2.78 0.00 0.00 0 0.00 2.78 0 NULL
ISC 1976 8 12 22 32 37.39 36.2942 70.7338... (6 Replies)
Discussion started by: reva
6 Replies