10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all, I have a large fasta (dna sequence) file. I would like to extract a portion of the header as well as the sequence (line below the header).
Input:
Output:
All accession values (the term I want to preserve, which is the string including and directly following "GL") are different, but I... (8 Replies)
Discussion started by: pathunkathunk
8 Replies
2. Programming
Hi all,
How am I read a file, find the match regular expression and overwrite to the same files.
open DESTINATION_FILE, "<tmptravl.dat" or die "tmptravl.dat";
open NEW_DESTINATION_FILE, ">new_tmptravl.dat" or die "new_tmptravl.dat";
while (<DESTINATION_FILE>)
{
# print... (1 Reply)
Discussion started by: jessy83
1 Replies
3. Shell Programming and Scripting
Hi,
I'm trying to extract if the (offset>0 || flags ) from the following line:
90.30.180.90.80 > 90.121.333.308.45133: Flags , seq 14480:15928, ack 1, win 8088, options >
15:59:11.156664 IP (tos 0x0, ttl 20, id 44442, offset 0, flags , proto TCP (6), length 1500)
try:
offset.(+) ||... (7 Replies)
Discussion started by: ENG_MOHD
7 Replies
4. Shell Programming and Scripting
I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line or sequence of lines starting with "Chr" they have to be displayed in output file with that sample.... (8 Replies)
Discussion started by: hravisankar
8 Replies
5. Shell Programming and Scripting
Witam, mam oto taki ciąg znaków:
8275610268 + 9012383215 =niepotrzebnytextPotrzebuję w bash'u wyciągnąć obie liczby (mają taką samą liczbę cyfr), zapisać je do osobnych zmiennych, ale coś nie idzie, kombinowałem z grepem, ale nie potrafię skleić tego wyrażenia regularnego, no i potem przypisać do... (7 Replies)
Discussion started by: menda90
7 Replies
6. Shell Programming and Scripting
Hello!
I'm working with AWK, and i have this code:
/<LOOP_TIME>/,/<\/LOOP_TIME>/
I want that match every everything between <LOOP_TIME> and </LOOP_TIME>, but not if the line have a "#" before the tags.
Someone can help me?
Thanks! (6 Replies)
Discussion started by: claw82
6 Replies
7. UNIX for Dummies Questions & Answers
this is how my xyz.log file loooks like :-
info ( 816): CORE1116: Sun ONE Web Server 6.1SP5 B08/17/2005 22:09
info ( 817): CORE5076: Using from
info ( 817): WEB0100: Loading web module in virtual server at
info ( 817): WEB0100: Loading web module in virtual server at
perl... (12 Replies)
Discussion started by: chris1234
12 Replies
8. Shell Programming and Scripting
Hi guys
I've been trying to write a regular expression.
If I'm tryin to validate a sequence of characters as follows...
AB1-232-623482-743 43/3
where
a) any character after the "AB" can be any alphanumeric character
b) the " 43/3" part is optional
is there a quick neat way for me... (5 Replies)
Discussion started by: djkane
5 Replies
9. Shell Programming and Scripting
I have written a script to test some isdn links in my network and I am trying to format the output to be more readable. Each line of the output has a different number of digits as follows...
Sitename , spid1 12345678901234 1234567890 1234567 , spid2 1234567890 1234567890 1234567
Sitename , ... (1 Reply)
Discussion started by: drheams
1 Replies
10. UNIX for Dummies Questions & Answers
Display all of the lines in a file that contain "Raspberry" followed later
in the line by the letter "a"
I tried: grep Raspberry*a filename
that didn't work
Anyone know a solution? (1 Reply)
Discussion started by: netmaster
1 Replies
03-26-2009
