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Search: Posts Made By: patrick chia
4
3,554
Posted By patrick chia
Hi, fajohnson... Your command line is worked....
Hi, fajohnson...
Your command line is worked. But still left all the header of the nucleotide sequence. Do you have better idea that I just remain the first header of those same nucleotide sequence?...
4
3,554
Posted By patrick chia
How can I remove those duplicate sequence in UNIX?What command line I should type?
The input is:
>HWI-EAS382_30FC7AAXX:4:1:1580:1465
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:1062:1640
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:272:629...
1
1,706
Posted By patrick chia
How can use the perl or other command line to calculate the length of the character?
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC...
2
2,841
Posted By patrick chia
How can I calculate the total of nucleotide in Unix?What command line I should type?
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC...
4
2,465
Posted By patrick chia
Perderabo, thanks a lot for your help. Your...
Perderabo, thanks a lot for your help. Your method is faster and effective. Really help me a lot. :b:
4
2,465
Posted By patrick chia
How to remove those sequence with same amino acid?What command line I should type?
My input is listed as:
giNumber RefAminoAcid VarAminoAcid
10190711 P P
10190711 D D...
1
4,029
Posted By patrick chia
How to use the programming in UNIX to count the total G+C and the GC%?What command li
Seems like can use awk and perl command. But I don't have the idea to write the command line. Thanks for all of your advise.
For example, if I have the file whose content are:
Sample 1....
5
52,397
Posted By patrick chia
How to use the programming in UNIX to count the total G+C and the GC%?What command li
Seems like can use awk and perl command. But I don't have the idea to write the command line. Thanks for all of your advise.
For example, if I have the file whose content are:
Sample 1....
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