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Ok, so this is a full row from file1 which has 78 columns:

--- rs144097162 NA 58246214 C A 546966 0.99949 0.73373 1419.4 3.594 0 0 1189.9 0.129 0 0 843.87 2.127 0 0 1307.7 2.272 0 0 1246.7 0.291 0...

Thanks pamu and Scrutinizer. I will try your suggestions and read up a bit on awk and will let you guys know.
Thanks a lot!

---------- Post updated at 02:40 PM ---------- Previous update was at...

Hi pamu, I wouldn't mind using more than one step even though in reality I have 5 files instead of 3.
Could you broadly explain the awk syntax please? My awk knowledge is almost zero.
Thanks for...

Hi guruprasadpr,
Many thanks for your reply. I have tried the command you suggest but it tells me: "join: File 2 is not in sorted order" which I think probably comes from the header line because...

Hi guys,
I have very basic linux experience so I need some help with a problem.
I have 3 files from which I want to extract columns based on common fields between them.

File1:
---...