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Hi,

I'm trying to edit my working bash script to an SGE script in order to submit it as a job to the cluster.

Currently I have:

#!/bin/bash

# Perform fastqc on files in a specified...

No - I was working with .sh. Edit: I'm working with SGE not PBS.

---------- Post updated at 04:30 AM ---------- Previous update was at 04:25 AM ----------



I believe so:

ls -l...

Returns
for: Command not found.
do: Command not found.
j: Undefined variable.

Hi,

Thanks for the suggestion. This gave the error

Illegal variable name


I'm actually having loads of bother with qsub. Made a test script sleep.sh


#!/bin/sh

for i in {1..60} ; do...

Edit - I don't know how to delete posts. The question I asked here ended up not being the question I should have asked as I didn't realise I needed to edit my script to comply with SGE.


Hi,
...