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Ok I realized I forgot to type an extra ' after F (dumb), but now it returns just usr1 printed once?

I tried and it didn't seem to work... It just says Unmatched ' ?

The 000* series.

I have a text file that looks like this :


root/user/usr1/0001/abab1*
root/user/usr1/0001/abab2*
root/user/usr1/0002/acac1*
root/user/usr1/0002/acac2*
root/user/usr1/0003/adad1*...

The first and second file have the same name, with the exception that the first file has 004 in the name and the second has 005. So yes, numerically.

I need to write a script (in bash) that copies the content of the first file in each folder of a directory to the second file in the same folder. I tried this and it didn't work - it just came back...

Scrutinizer, you are an awesome human being. I am forever grateful, it does exactly what I wanted!!!

for file in `cat 1.txt`; do
ln -si $file ./root/00*/folder2/*5*_done.nii.gz
done

I have 2 txt files, 1.txt and 2.txt which contain the paths to files that need to be linked.

Example 1.txt:
/root/001/folder2/image4.nii.gz
/root/002/folder2/image4.nii.gz

Example 2.txt:...

I know not to use a subject if files with a specific part in their names are missing. So yes, there is a list of necessary files.

And by "lines" I meant each row of ls output - directory of each...

Bash scripting beginner here...

I have many folders, each folder representing one subject. Not all subjects have all the required files, so I need to somehow cycle through all the data and then...