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Forum: Shell Programming and Scripting 10-31-2019

Adding sequential index to duplicate strings

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Thanks that worked perfectly

Thanks that worked perfectly

Forum: Shell Programming and Scripting 10-31-2019

Adding sequential index to duplicate strings

7,346

Posted By

Adding sequential index to duplicate strings

I have a text file in the following format

>Homo sapiens
KQKCLYNLPFKRNLEGCRERCSLVIQIPRCCKGYFGRDCQACPGGPDAPCNNRGVCLDQY
SATGECKCNTGFNGTACEMCWPGRFGPDCLPCGCSDHGQCDDGITGSGQCLCETGWTGPS...

Forum: Shell Programming and Scripting 10-26-2019

Shorten header of protein sequences in fasta file to only organism name

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Thanks, would it be possible to retain the '>' at...

Thanks, would it be possible to retain the '>' at the header of each sequence?

Forum: Shell Programming and Scripting 10-26-2019

Shorten header of protein sequences in fasta file to only organism name

8,170

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Shorten header of protein sequences in fasta file to only organism name

I have a fasta file as follows

>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3
MMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTM...

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