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This is what I've done and it works.
The reason for this whole hassle was that it is a part of a loop.
But I put the contents of my calculation batch script into the main script, and it seems OK. ...

Thank you guys; however, none of these things seem to work :(
(1)
"batch <<EOF..." and "wait" commands both produce the same message:
"Can't open /var/run/atd.pid to signal atd. No atd running?"...

How do I execute a batch command from a script, which "waits" with the next command until the first one has finished?

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A piece of my script looks like this:
#!/bin/sh
(...)
# run a long...