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Thanks Optimus_P

I got it now. I had a serious brain fart and did not notice ^M's in my file comparison. Got rid of them and everything was cool.
Thanks again for taking the time to help...

I have file1 and file2. I am trying to get the difference between the two of them to another file? I have tried diff and fgrep with no luck.. I dont think I am using the proper switches to make...