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Hi,
I have data like below:1 10
2 20
3 30
4 40
5 50
6 60
1 70
2 80
3 90
4 100
5 110
6 120
1 10
2 20
3 30
4 40
5 50
6 60
1 70

Thank you so much. It worked. From changing file format to RudiC's new approach.

Thank you so much for your solution. But I used the following code:
awk '
NR==FNR { # When reading the file for the first time
R[$2 FS $3] ...

Ca21chr2_C_albicans_SC5314 2159343 2228327 Ca21chr2_C_albicans_SC5314 636587 638608
Ca21chr2_C_albicans_SC5314 5286 50509 Ca21chr2_C_albicans_SC5314 634021 636276...