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You were right however. It was CR line terminators, I just did not check that properly.

Fromdos and dos2unix did not help, dunno why, but what helped was
vim list.txt +"%s/\r/\r/g" +wq

Then...

Thank you.
I tried

grep -URl ^M . | xargs fromdos
xargs: fromdos: No such file or directory

and

grep -URl $'\r' . | xargs fromdos
xargs: fromdos: No such file or directory

Do you have...

Hello,

I work in Ubuntu 16.04, I am new to Bash and something is wrong with my script, please help.

I have a few hundreds of subjects data (like subj003.nii.gz, subj012.nii.gz etc. up to...