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is the following correct to save the script
awk '
BEGIN { print "gene ID CHROM POS txstart txend"
}
FNR == 1 {
next
}
FNR == NR {
POS[++k] = $2
ID[k] = $3
next...

1) mac OS 10.12.2
2) shell is /bin/bash

can you explain 3,4 what exactly do you want

I copied and paste the code in the terminal that is it

by the way I'm working under a server from my...

I'm sorry I wasn't trying to say that this is my code, I just forgot to write it is not mine, I'm using terminal in mac

---------- Post updated at 11:46 PM ---------- Previous update was at 11:36...

you are so hard on me , by the way i'm not trying to confuse you or test your memory, I don't know how to modeify the code , If you can help please do so

I have the following Snps data
CHROM POS ID
chr7 78599583 rs987435
chr15 33395779 rs987436
chr1 189807684 rs987437
chr20 33907909 rs987438
chr12 75664046 rs987439


and the following gene...

Im sorry there was a typo in the columns , I want to transpose the data I just wrote two columns as an example for the output of course it will have more columns.

I'm using terminal in mac , I...

Hi

I have the following sample of data: my full data dimention is 900,000* 1119

rs987435 C G 1 1 1 0 2
rs345783 C G 0 0 ...

NO please I have added the data I want to see as an output

the output is file2 which is the gene info and add to it the SNPID

** names seqnames start end GENEID
* rs3753344 ...

the output is file2 which is the gene info and add to it the SNPID

** names seqnames**** start****** end** GENEID
* rs3753344**** chr1** 1142150** 1142150** ** TNFRSF18******
* rs3753344****...

I'm expecting that a gene might have more than snpID,
and there might be genes that don't have snps it will be NA
and there might be one snpID for pre one gene

awk 'FNR==1 {next}...

I have the following data set about the snps ID txt file

POS ID
78599583 rs987435
33395779 rs345783
189807684 rs955894
33907909 rs6088791
75664046 rs11180435
...