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Hi. I've tried several different programs to try and solve this problem, but none of them seem to have done exactly what I want (and I need the file in a very specific format). I have a large file of...

Great that has worked perfectly, thanks!

Sorry maybe I didn't explain. The output you gave in your first post is exactly what I wanted, but the output that I got was:

AATTGTGGTGAAATGACTTCTGTTAACGGAGACATCGATGATTGTTGTTACTATTTGTTCTCAGGATTCA...

Thanks - it seems to return the sequence data but not the ID tag line. It also seems to be copying out a lot more than just the 50 or so tags in the second file.

Helooo,

So I have a .fasta file (a text file with sequence data) which looks like this, with just over 3 million lines of data.

>TCONS_00000001 gene=XLOC_000001...

Thanks that's worked I think. Would it be possible to maybe make it so that it copies the results into a text file, because i can't seem to copy and paste the terminal output into a word file because...

Yeah you're right, I didn't include the zero.

Yeah that looks great, thanks so much. How do I run the script? Is it a perl script or should I just put it into the linux terminal?

Hi,

I have text file with the header like this

tracking_id condition replicate FPKM
XLOC_000001 alpha 1 10.3199
XLOC_000001 alpha 0 10.3686
XLOC_000001 alpha ...